Basic Information

Insect: Ceraclea dissimilis
Gene Symbol: -
Assembly: GCA_963576895.1
Location: OY756367.1:14188465-14190605[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0018 0.08 13.8 1.5 1 23 155 178 155 178 0.97

2 11 5.2e-05 0.0023 18.7 0.6 2 23 185 206 184 206 0.97

3 11 2.5e-06 0.00011 22.8 3.3 3 23 215 235 214 235 0.99

4 11 1.8e-06 8.1e-05 23.2 0.7 1 23 241 263 241 263 0.98

5 11 2e-05 0.00089 20.0 0.1 1 23 269 291 269 291 0.98

6 11 0.001 0.047 14.5 1.4 1 23 297 320 297 320 0.95

7 11 0.0013 0.059 14.2 0.5 1 23 326 350 326 350 0.97

8 11 0.00029 0.013 16.3 1.9 1 23 356 378 356 378 0.99

9 11 0.00079 0.036 14.9 0.6 2 23 385 406 384 406 0.97

10 11 0.051 2.3 9.2 2.1 1 23 412 435 412 435 0.97

11 11 1.5e-05 0.00066 20.4 1.6 1 23 440 462 440 462 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0018	0.08	13.8	1.5	1	23	155	178	155	178	0.97
2	11	5.2e-05	0.0023	18.7	0.6	2	23	185	206	184	206	0.97
3	11	2.5e-06	0.00011	22.8	3.3	3	23	215	235	214	235	0.99
4	11	1.8e-06	8.1e-05	23.2	0.7	1	23	241	263	241	263	0.98
5	11	2e-05	0.00089	20.0	0.1	1	23	269	291	269	291	0.98
6	11	0.001	0.047	14.5	1.4	1	23	297	320	297	320	0.95
7	11	0.0013	0.059	14.2	0.5	1	23	326	350	326	350	0.97
8	11	0.00029	0.013	16.3	1.9	1	23	356	378	356	378	0.99
9	11	0.00079	0.036	14.9	0.6	2	23	385	406	384	406	0.97
10	11	0.051	2.3	9.2	2.1	1	23	412	435	412	435	0.97
11	11	1.5e-05	0.00066	20.4	1.6	1	23	440	462	440	462	0.98

Sequence Information

Coding Sequence: ATGGATAATTTCGATAAAATAAAGTACGTTTGTGAAgaagaaatattaaatttcgACGAAATATGTCGACTTTGCTTGAAAAGTAAGAGTGGGATGAGATGTATTTTCGAAGGACTTACATCAGACAATGATTGGGAACACAGGAAGCCGTTTATTAGGAATATTAAGGAGATGATTGTATCATTCACTACAATTGATATTGTTCCAGATGACGGTCTTCCTTCGCTCATTTGTTTGGACTGCACGGAAAATACTCAAAAATCTTTCGAATTCAAAAAACAATGTGAACTCTCAGATTACCGATTAAGAAACTATGTcccaaaaaacacaattaaaacaaaaacagaTCCCGATATGATGGAATGTGTAagtaagaaaaagaaaacaaaagtaAATAGAAAGAAACAAAAGAATTCTGAACAATCGAGCAGCGAAGAAACAATTGAAATTAGTCAGCAGGTATTTTCTTGTACAGAATGTTCGGCAAATTTCTCACTAGAGAAAGATCTAAAAAAGCATTTCAAAACAGAACACAATAAGAGTGACAAGTTGACTTGTGAAATTTGTAATCAGACATTTGCTCAGGCGCAGACGTTATCCAGACATAAGAAAATACACCAAGAGAATCAGAGAAATAATCTATGTACGACGTGCGGAAAAAGTTTTCACCGAACCGACGATTTACGCCGACACATGCGAGTACACACAAACGAGAGACCGTATGCTTGTACGCTCTGCCCTAAAAGCTACAAACAATCTTCAGAATTAACCGATCATCTTAAATCACATTCCAAAATTAAAAGTTATATTTGCACAGAGTGCGGGAAAAGTCTAGCTACACGGAACGGTTTATATGTTCATATGAAAGTTCACAGAGGTGAAAAGAATCACGTTTGCAAAATCTGcggtaataaatatgtaacgACGGGAGAGTTAACATCGCATATAAATCACATACATTCTCAAGCAAAACCGTTTGTCTGTTCGTTTGATGGATGCAGTCGAGCGTTTGTGACGAAATTATCTCTGGTTACTCATACGAGGAGTcatactggagaaaaaccttaCCAGTGTCTGATTTGTAACAAGTATTTGGCCACGGCATCATCACTCCACGATCACAAACGGACACACACAGGTGAGAAACTAAAGACGTGTACGACTTGTGGACAAAAGTTGGGCAATGCACAAGCACTGAAGAAACATCTTCGAATTCACAGCGGAGAACGTCCTTACAGGTGTACTGTTTGTTTAGAGACGTTTATATGCAGTTCGTCCCTGAGTTCGCAcgtcaaaataaaacatttggATAAAGAACATCAGTGTGTGGAATGTAAGAAGATGTTTGCACTCCCGTCTAAACTCAGACAACACATGAAGATACACGTTAAAAATaatcaagaaacaaaggataattACAATGACGATAAAGTCGTCATAGATTTCAGTAAAACAATGCATCAAGAATACAAAACTAATCAAGATCAAATGAAGTCATCGCAATGTAACTATGGACTGTTTAAAACTGCTTCGAGTCTAATATTTCAAAAGATAGTCAATCCTTCAGAGGTGAAAGATTGTCGAGAAGAAAATAAGAAGACGATTCAATTGCCGTTAGAACTGCAAAACGATACAAAACTTATTTCGCATATTATTCCTGTTACTCAGATGTCTGTGCCTCAAAccattatttctcattatttgtaa
Protein Sequence: MDNFDKIKYVCEEEILNFDEICRLCLKSKSGMRCIFEGLTSDNDWEHRKPFIRNIKEMIVSFTTIDIVPDDGLPSLICLDCTENTQKSFEFKKQCELSDYRLRNYVPKNTIKTKTDPDMMECVSKKKKTKVNRKKQKNSEQSSSEETIEISQQVFSCTECSANFSLEKDLKKHFKTEHNKSDKLTCEICNQTFAQAQTLSRHKKIHQENQRNNLCTTCGKSFHRTDDLRRHMRVHTNERPYACTLCPKSYKQSSELTDHLKSHSKIKSYICTECGKSLATRNGLYVHMKVHRGEKNHVCKICGNKYVTTGELTSHINHIHSQAKPFVCSFDGCSRAFVTKLSLVTHTRSHTGEKPYQCLICNKYLATASSLHDHKRTHTGEKLKTCTTCGQKLGNAQALKKHLRIHSGERPYRCTVCLETFICSSSLSSHVKIKHLDKEHQCVECKKMFALPSKLRQHMKIHVKNNQETKDNYNDDKVVIDFSKTMHQEYKTNQDQMKSSQCNYGLFKTASSLIFQKIVNPSEVKDCREENKKTIQLPLELQNDTKLISHIIPVTQMSVPQTIISHYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -