Cdis016549.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756375.1:2918753-2922496[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.039 1.7 9.6 6.0 2 23 401 423 400 423 0.95 2 21 0.22 10 7.2 6.3 2 23 430 451 429 451 0.96 3 21 0.00047 0.021 15.6 1.1 1 23 457 479 457 479 0.97 4 21 0.0027 0.12 13.3 0.8 1 23 485 507 485 507 0.98 5 21 0.23 11 7.2 0.2 2 23 516 537 515 537 0.96 6 21 9.3e-05 0.0042 17.9 1.5 1 23 543 565 543 565 0.98 7 21 0.16 7.3 7.7 0.8 3 23 573 593 571 593 0.96 8 21 1.3e-05 0.0006 20.5 1.5 1 23 626 648 626 648 0.99 9 21 0.0059 0.27 12.2 1.7 3 23 658 678 656 678 0.96 10 21 0.0033 0.15 13.0 1.2 2 23 686 708 685 708 0.94 11 21 7.1e-05 0.0032 18.2 1.4 2 23 782 804 781 804 0.96 12 21 1.1 52 5.0 5.6 1 23 810 832 810 832 0.97 13 21 0.00064 0.029 15.2 1.2 1 23 838 860 838 860 0.97 14 21 0.011 0.5 11.3 0.7 1 23 866 888 866 888 0.97 15 21 0.033 1.5 9.9 1.3 2 23 896 917 895 917 0.96 16 21 4.4e-05 0.002 18.9 0.7 1 23 923 945 923 945 0.98 17 21 0.13 5.8 8.0 0.6 1 23 951 973 951 973 0.97 18 21 0.0004 0.018 15.9 5.8 1 23 1009 1031 1009 1031 0.98 19 21 0.013 0.57 11.1 3.6 1 23 1042 1064 1042 1064 0.98 20 21 0.026 1.2 10.2 3.6 1 23 1070 1092 1070 1092 0.99 21 21 0.00025 0.011 16.5 1.2 1 23 1098 1120 1098 1120 0.97
Sequence Information
- Coding Sequence
- ATGGATCATCCACTCAATTTGGATCAGATCTCTTATAACATCCAGTCGCACCTCACGTGCGATGATCCCATCAATCTCAACACAAACTTCCAGAGAAATGTATTTCTCACGCAGAGAACGCAAGAGTCGTTTGCAGTTACACAGAAGTCTCACGAGACGACTACCACCTACATCACACAGAGGCCGACGTCGTACATAGCTCAAAAGGGACAAGAAACGTACATACAACAGAAAAGTCATGCCCCTTACATCGCTACTAAAGGACAGGCGTACATTGCGCAGAAAAATCAAGAACCGTACATTGCACAGAAGAACCAAGAAGTGTACAAAGCTCAAGAAACGTATATACTACCCAAAGTGCAAGAAACATACCTCATACCGAAAGGACAAGAGACCTACATTATTCCCAAAAGTCAAGAGACTTATATATTACCGGATAAACCAAACGAAACATACCTAGTGCCGAAAACACAGGAGTCTTACATTATTACTAAAGATCAGACTTCGTACATTATTCCTAAAAATCAAGAATCTTACATTATACCGTCCAAGAGTCAAGAGTTTGTCATTCCCAAATCTCAGGAGTCGTACATCGCTCAACAGAAAGATCAAGAGATTTATCTCATTCCCAAAACTCAGTCGTATATTATTCCTAAAGGACAAGAGACGTACATCCCCCCTAAAGGACAGGAGACTTATATTGTGCCCAAGACTCAGAACTATATTATCCCTAAAACACAAGAGGCGTATTTGATACCGAAAAGTAGTCAAGATGCGTATCTGGATCCGAAACAACATCAAGAAACCTATATGATCGCTCATAAGGATCAAACGCATCTACTTCAGAAGGATTTGGATGGAATTACTTATGAGCGAAGACCGGAAgatgattattatttgattcaAGTCACTGTGGCTGATGAGGCGCAGTCTCAGGTTTGCGATAAAGACTTGGAAAAGAGACACGATGGAACAAATATCATACAACTTGAAGTTGGCAAGAGGGATGGAATACTTCACACAACTCTTCAACCTGCCATACATCATCAACCGGCTATTCAACAGCAACAAGCTCAGCAACATcagcaacaacaacaacaacagcatGTGCTCAAAGTAGATGACGATCTTCCGGGTTTGGAGTGCTTGACGCAGTTGACGGTTCCTGAAAATGAAAAGGTCACACAAACAAAACCCATCTCGTGCGATGAGTGCTCGTACAGTTGCCGTTTTCCAAGTTCACTGAAAAAACACAAGAAGAATTGCCACACAAAAGGCAGTGTGTTAACTTGCAAAATCTGTAACTATACGTGTAATAAGAAAAGAGATATGAAACACCACGAACTGTCTCATCGAAGGTGGACGAGGTACGCTTGTGATCAATGTGATTATAGATTCCAATCTCAGAGCAAACTTGAAatacacaaactcaaacacACAAAGGCTAAACCGTTTACATGTTCCATCTGCAACATGCAGTTTCAGAAGTTGGACGACCTCAAAGTGCATAATCTAACTCACGTGGAGGATGGCAAGCAGGCCATAATGTGCGACGAATGCGGTTATCTGTCAAAAGATACGTTAGATCTGGAAAATCATAGCAAAACTCATGGACAAGAGAAGAAGTTTTCTTGCGATACATGCGGACTCAAATTTAAATACCAAGTCACTCTCAACGGTCATATGAAGAAACACGAAGAGAGGAAGTATTATGGGTGTAATCAGTGCAGCTACGTCACCAGCAAAGTCTTCTATTTGAAGAATCATCTCAAGGGACATTTGAGCGATATGAAAACGGGAGAGATGGCATCCAAGAAAGTTAAAAAGTTGGTATTCAAGAAACCTTCAACTAAGACTAAATCTGATGATCGACCGTATGAGTGTGACAAATGCGGCTTCGCCAGCAAGAGGAAATTCAATCTCCAGACGCACATGAAGGTGCACGATCCTCCGACTGGCGAGACACTGTTCTGTAACGAATGCAACTATACAACCAACAGAGACAGATACTTGAAGAAACATCAAATCATGCATCAGTCAAAGAGTAAACCCCTCGTGTGCACTCTGTGTGGCTACACATGCAAGAATCCTAAGGTATTGAGAAAACATAAGCTCGTAATACACGAGATAGAGGAACCAGAGCCAGTGAAGGAAGAGAAATCGCAAGAATATCTCGAAATGGCTGAAATAAGACGGAAACTCTCGAAGCAAAGTTATTTCGTAACACTCGTCAGTATAGGAATTCAAACAGATCCCATTCCAGAGGAAGAACTGGCTAAAGAAAATGCCGTCAAAGAAGAGTCTAAACCTAAGAAGGCGAAAACCGATGGACCCAAGTCGGTTACTTGTGATGTGTGTAATTATACTTGCAAATATCCCAGCACACTCAAGAGACACATCATGAGCGTTCATATGCAACAGAACGTCTTCTCCTGTACGTCGTGTGACTATTCGTGCGGCAAGAAGAGAGACATGAAACACCACGAGTTGATGCATCGGAGACTGAGGAAGTTTGCCTGCGATCAGTGTGACTACAGATTCCAGTCGCAGAGCAAACTCGAGATTCACAAACTCAAACACTCGCAACCCAATCCATTCACTTGTAGCGTCTGTGGAATACAGTTCCAGAAACTTGTCGATCTCAAGAGCCACAACTACACCCACTCCGATGGAAAGTCATTAATTATGTGCGACGAATGCGGATGTATCTGCGCTCAAATGTACGATCTCGAAACTCACAAGCAGATACACGTCAACGAGAAGAAATACGCTTGTCAAGAATGTGGGCTGCGGTTTAAATACCAAGTGACGTTGAACGGTCACATGAAGAAACATCAACAGAAGAAGTTGTTCGCATGCAATCTCTGTCCGTTTGTCGGAacgaaaatgttttatttgaaaaaacacGTTCAATCGCATTATGAAGTGAAGAAAACAAGTTGTGATCAATGCGGCTTTACGCCCAAGAATCCAACCACGACCGCTTTAAAGTTACACATGATGACACATTCTTCAGAGAAACCTTTCAACTGCTACATGTGCCCGTTCACATGCAGAACCAAATCTAATTTACGGATGCACATGAAGAAACATAATCGAGTCGTGCCAGAAAAGGCGAAATTCTTTTCATGTCGCCAGTGTAAATATACATCGACGAAATCAAAGAATTTCAGACTGCACATGTTAATACACCGCGAAGATGAACCTTACAAATGCGACGCATGTGGTTACACGTGCAAACTCATGAGTTATCTCAAATCTCACAAGTTGACCCACGCACCCGTTAAACCGCATCCGTGCGATCAATGCGAGAAGAGTTACAGAACGGCCTTCGATCTCAAAGTCCACAAAATGATACACAGAGAAAACCCGTTCGCTTGCGACGAATGCGATTTTAACACTCACTGCTTTACGAATTTGTACAAACATAAGAAGGAACACGTCGCTAAAGCTAAGAAAGAGAAACAGCAAGATGACGAGCAACATGTTGCTGAGAATGGGCTCGAACAAATTAGTATAGTTCAGCATCAGCCACACAACATGATAGAACAGATTGGAATACATCAGATTCAAATTCACAACGGTCAAGCATTAGACCATCACGGTCAACTGTTGACTTTAGAATCTAATCTCCCACCGCAGTTACAGTCACAACTTCACATACAACAGCAGATGCAGatacaacatcaacaaataCAGATGCCCACACTACAAATACAATCGAGTAATTTACAAGCTGGGTAG
- Protein Sequence
- MDHPLNLDQISYNIQSHLTCDDPINLNTNFQRNVFLTQRTQESFAVTQKSHETTTTYITQRPTSYIAQKGQETYIQQKSHAPYIATKGQAYIAQKNQEPYIAQKNQEVYKAQETYILPKVQETYLIPKGQETYIIPKSQETYILPDKPNETYLVPKTQESYIITKDQTSYIIPKNQESYIIPSKSQEFVIPKSQESYIAQQKDQEIYLIPKTQSYIIPKGQETYIPPKGQETYIVPKTQNYIIPKTQEAYLIPKSSQDAYLDPKQHQETYMIAHKDQTHLLQKDLDGITYERRPEDDYYLIQVTVADEAQSQVCDKDLEKRHDGTNIIQLEVGKRDGILHTTLQPAIHHQPAIQQQQAQQHQQQQQQQHVLKVDDDLPGLECLTQLTVPENEKVTQTKPISCDECSYSCRFPSSLKKHKKNCHTKGSVLTCKICNYTCNKKRDMKHHELSHRRWTRYACDQCDYRFQSQSKLEIHKLKHTKAKPFTCSICNMQFQKLDDLKVHNLTHVEDGKQAIMCDECGYLSKDTLDLENHSKTHGQEKKFSCDTCGLKFKYQVTLNGHMKKHEERKYYGCNQCSYVTSKVFYLKNHLKGHLSDMKTGEMASKKVKKLVFKKPSTKTKSDDRPYECDKCGFASKRKFNLQTHMKVHDPPTGETLFCNECNYTTNRDRYLKKHQIMHQSKSKPLVCTLCGYTCKNPKVLRKHKLVIHEIEEPEPVKEEKSQEYLEMAEIRRKLSKQSYFVTLVSIGIQTDPIPEEELAKENAVKEESKPKKAKTDGPKSVTCDVCNYTCKYPSTLKRHIMSVHMQQNVFSCTSCDYSCGKKRDMKHHELMHRRLRKFACDQCDYRFQSQSKLEIHKLKHSQPNPFTCSVCGIQFQKLVDLKSHNYTHSDGKSLIMCDECGCICAQMYDLETHKQIHVNEKKYACQECGLRFKYQVTLNGHMKKHQQKKLFACNLCPFVGTKMFYLKKHVQSHYEVKKTSCDQCGFTPKNPTTTALKLHMMTHSSEKPFNCYMCPFTCRTKSNLRMHMKKHNRVVPEKAKFFSCRQCKYTSTKSKNFRLHMLIHREDEPYKCDACGYTCKLMSYLKSHKLTHAPVKPHPCDQCEKSYRTAFDLKVHKMIHRENPFACDECDFNTHCFTNLYKHKKEHVAKAKKEKQQDDEQHVAENGLEQISIVQHQPHNMIEQIGIHQIQIHNGQALDHHGQLLTLESNLPPQLQSQLHIQQQMQIQHQQIQMPTLQIQSSNLQAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00179689;
- 90% Identity
- -
- 80% Identity
- -