Cdis004428.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756361.1:11497956-11500740[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.71 32 5.6 0.7 1 19 84 102 84 103 0.91 2 18 0.00046 0.021 15.7 0.3 2 20 145 163 145 165 0.93 3 18 0.31 14 6.8 0.7 2 23 173 194 172 194 0.97 4 18 0.00028 0.012 16.4 0.1 3 21 205 223 204 224 0.94 5 18 0.22 9.7 7.3 1.4 2 23 232 252 231 252 0.96 6 18 0.16 7.2 7.7 2.5 1 23 257 280 257 280 0.95 7 18 3.9e-05 0.0018 19.0 2.6 1 23 286 308 286 308 0.98 8 18 0.0014 0.065 14.1 4.5 1 23 314 336 314 336 0.98 9 18 0.02 0.9 10.5 1.1 3 23 344 364 343 364 0.98 10 18 2.1 96 4.1 0.3 6 21 374 389 370 390 0.92 11 18 0.0014 0.064 14.1 4.0 1 23 421 445 421 445 0.93 12 18 1.6e-05 0.00074 20.2 3.5 2 23 453 474 453 474 0.97 13 18 0.0036 0.16 12.9 5.0 1 23 480 503 480 503 0.90 14 18 0.0001 0.0047 17.7 4.1 2 21 513 532 512 534 0.93 15 18 0.00014 0.0062 17.3 0.6 1 23 540 562 540 562 0.98 16 18 8.8e-05 0.004 17.9 2.1 1 23 568 590 568 590 0.97 17 18 0.0014 0.061 14.2 2.4 1 23 596 618 596 618 0.98 18 18 0.0006 0.027 15.3 4.4 1 23 624 646 624 646 0.98
Sequence Information
- Coding Sequence
- ATGGATTACCAAAATGATATAGGTTTGCCCAAGGAACACTGCTACTTGAATTTCAGTGGATTCGATGCTTACAGTAATACAAATGAATCTGTAAGCGTAATTACCGACCCTCAGATTTTATACCACGTACAGGGAAATGAGGAACTTCCTGACACCACGGATCAAGCAtcaataatattagatatgtcAAATAATGTCAAAATAGAATCTCTTTCAAATGTATCTGATTCCGGTGTAGTGATGCACTTGTACACATGCATTCATTGTAATTTGAGATTTGTCCAACAATCTGATGTTGACAGTCATTATCCGTACTGCATGAAGAAAGTGAATTATCAAATGAGTGATATCTCTCTACCTGAAAACAAAACTAAGGAGATTGATTCATCAAATGAGAATAGTGGTCGTGTGAGAAACAGTGGTAATGCCAACACGTGTGATATTTGTTTAAAATCTTTTAAAACAAgtgaattattaaataaacacgCAGAGAGAACATCCAATGAGGGTCCAGTGAAATGTAATCTGTGCACTAGAATGTTACATGGACCTGCGGGATATTTAAGACACCTCAAGTCACATTACGGAAAGAGTTGTGAGAAACCTAATAGTTGTGTTGTGTGTGAGAAAGCATTTGTTACAAAGGAGAAGTTAGAAAAACACATGAAAGCCCGGGAAGATGATGTACCTATAAAATGTAATCTCTGTGAGAGAACACTTCATTCGTCTGGATATGAATATCACATGAAAGCTCATTACACATTAAAGTACGAGTGCCTCCCCTGCAGTCTCAAGTTCATATCACTACACCAACTCAAAGAACATAAGAAAACATTTCACATTGATGACAAGCAATTTGTATGTGAAGTGTGTAAAAAATGTTACAAGGACAGCACTGGACTCAAGATGCACCTTCGATTACATACAGGAGAGACCCCATACTCTTGTGACACTTGTCATATGAAGTTTCCCTTCTCATCCACACTCAAATATCATAAGAGGATTCATTCTCAACAACGTCCAACATTGTGTTGTATTTGTAACGTTTCATTCCCTAGCATAAGAGAACTAACCACTCACAATAGAATTCATGATGGAGAGAAGATATATAAATGTTCATGTGGTAAATTATTTAGACTCCTCACTAGTTTAATCATACATCAAAAAAACAGCAAAGAAAAGTGTGTAGAATCTACGCAACTCTTTGATAAAAAGTCTTTTTCTTCAATTACTAGCAACATTAATACGGGCCATAAAAGATATTCGTGTGAAAAATGTACTAGATCCTTCCACACTCTCAAAGCTCTAGAAAAACATAAACGAAGAAAAATCCACACATTAATTAAAGAGGAACCCACCTGTAAAGTTTGTGGAAAGTGTTTCCAAACATCGggtcaattaaaaaaacacgaaaaggTTCATGTAATGGAACTTACACATTCTTGTACTGTCTGTAGTAAATGCTTTACAAGTGCAGACAAATTAAAAGAGCATTTTACGTTATCACACAACAAGCAACCAAACACACAAAGATGTATGTGTAACACATGTGGAAAGGTGTTTGCTGGTTCagtcaatctaaagaaacacaTGAGATGTCACACAGGACAACGGCCATACGTATGTCAGGTGTGTTCTGCGTGTTTTGCTGATCGTAGTACTTTAAATGATCATCGCATTGTACACACAGATGTTAGAAGTCACTCATGTAATACGTGTGGTAAGGCCTTTAAGTCATCCCGTGTCTTGAAGATACATTCTCGTGTTCACCAGCCAGACAGACCATACAAATGTAACGTGTGCAGTAATTCATTCAAACATCTTGGGACACTCATCTCCCATAAAGTAACCCACACGGGACTCAAAGCCCACCAATGTCAAATATGTTGGATGAAATTTTCTTATGCCAAGGGCTTGAAAAGGCATCATAAGATTCATGGAGAATGTAGGAAACCAGACAACAAGGAAGTTGAACACAATCAGAATATTCATCCAGAGCAATGTTCATATTCAGAGTGTGTCCCAAGCAGTGGAATTCATTCACAACTAGATGTGCCACAACCACTTTACCCACACCATTAG
- Protein Sequence
- MDYQNDIGLPKEHCYLNFSGFDAYSNTNESVSVITDPQILYHVQGNEELPDTTDQASIILDMSNNVKIESLSNVSDSGVVMHLYTCIHCNLRFVQQSDVDSHYPYCMKKVNYQMSDISLPENKTKEIDSSNENSGRVRNSGNANTCDICLKSFKTSELLNKHAERTSNEGPVKCNLCTRMLHGPAGYLRHLKSHYGKSCEKPNSCVVCEKAFVTKEKLEKHMKAREDDVPIKCNLCERTLHSSGYEYHMKAHYTLKYECLPCSLKFISLHQLKEHKKTFHIDDKQFVCEVCKKCYKDSTGLKMHLRLHTGETPYSCDTCHMKFPFSSTLKYHKRIHSQQRPTLCCICNVSFPSIRELTTHNRIHDGEKIYKCSCGKLFRLLTSLIIHQKNSKEKCVESTQLFDKKSFSSITSNINTGHKRYSCEKCTRSFHTLKALEKHKRRKIHTLIKEEPTCKVCGKCFQTSGQLKKHEKVHVMELTHSCTVCSKCFTSADKLKEHFTLSHNKQPNTQRCMCNTCGKVFAGSVNLKKHMRCHTGQRPYVCQVCSACFADRSTLNDHRIVHTDVRSHSCNTCGKAFKSSRVLKIHSRVHQPDRPYKCNVCSNSFKHLGTLISHKVTHTGLKAHQCQICWMKFSYAKGLKRHHKIHGECRKPDNKEVEHNQNIHPEQCSYSECVPSSGIHSQLDVPQPLYPHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -