Cdis017513.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756376.1:5084697-5089892[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00029 0.013 16.3 2.5 1 21 45 65 45 66 0.95 2 13 0.65 29 5.8 2.7 1 23 186 209 186 209 0.90 3 13 0.011 0.48 11.4 0.4 2 23 217 238 216 238 0.96 4 13 4.7e-06 0.00021 21.9 1.4 1 21 242 262 242 263 0.93 5 13 1.4e-05 0.00065 20.4 0.5 1 23 276 298 276 298 0.98 6 13 0.00054 0.024 15.5 0.4 1 23 308 330 308 330 0.99 7 13 0.0004 0.018 15.9 0.4 1 23 336 358 336 358 0.97 8 13 3.6e-05 0.0016 19.1 0.2 3 23 366 386 364 386 0.98 9 13 0.00063 0.028 15.2 2.5 1 23 392 414 392 414 0.97 10 13 0.00019 0.0084 16.9 0.9 1 23 420 443 420 443 0.96 11 13 4.7e-06 0.00021 21.9 2.1 2 23 450 471 449 471 0.97 12 13 0.0017 0.076 13.9 3.6 3 23 479 499 477 499 0.98 13 13 0.0016 0.072 14.0 1.9 2 23 506 528 506 528 0.96
Sequence Information
- Coding Sequence
- ATGAGTAAGACGAGAGCTACAAGAGCTACGGCGAACGGAAAACAGAAGAATGACTCTCTTGTAATCATAAAGACTCCAGAGAATGGAGGTCCCGCTGAAAAAATAGCCGACGTAAAAACGTCTTTGATACAACACATGtgtaataaatgtaataaaaaatacacaacatcCGTCGGACTTAAAAGACATCTGAAATTCTGTAACGATTCTAAAAATGACATCAATCTAAAAATTCCCGATGCGAAAACTAAACGAGTTGAAAATCATAATGATTTGAATTCGAGGAATTTGAATCTTTTGTCGGAAAACACTCGAGACAGTGGTATAGGAATAGGTGAAGCTACAAACAGTACGGCCAACTCACAGGCATCGGATGAATCCCACAATGGTTCCGTTGAAGAGTCTACAAGTGCCTCTCGCAAAGTGGTTGATAGAAATCCATATGAGTTTGATGAAGAGTTGGATGATCCACTTAGTCTGCCTCACGTTAATGAAGATCCTAGCTTATGTCAGTGTTGTGGAGAGGACCTGGCTACAGCACATAAAGCTGGCCCATACAAGTGTGAAATATGCATAAAGTATTATAAAAAGAAGGAATCGTTCCAAGAGCACAACACAAATTACCATTCCACCGCTCCCGGGGCAGTCAAGTGCAACAAGTGTCCCATTGTGTGTCCCGACAGGACCATGCTGCGGGACCACGAGGAGGTCCATAACCGAGAGTTTGCCTGCGACAAGTGTGACAAGAGGTTCAGCAGGAAGTATAACCTCGCCAGACACAAGCAGCAGAGGGGCTGTGATCCCAGGGAGAAGAAAGTAAAGATGTTTGAATGCCAGGCTTGTGGTAATGAGTTCAGTCGTAAGGACAATCTACTGACTCACCTGCGGATGCACTTGGGGACACCAGCCAATCTGAAGGAGTACACGTGTAACTACTGCGGGAACAAGTACAGAGGCAGGGGGGCCTATACTATACATGTTCGTATTCACACAGGTGAAACTCCATTTGCGTGTGACTTCTGTCCCGTGGCATTCAGGTCCAAGTTGGCCCTCGTGAAGCATCGCCGCAGACACACTGGGGAGAAGCCCTATGGTTGCTCTCAGTGTGGTAAAGCCTTTGCGGCTAAGGAGACCCTTAACCGTCACTTGCTGACTCACTCGGAGGAGAAGCCCTACTCGTGCCTCAAGTGTGACATGTCCTTTATACAGATGACACAGCTGCGCGCTCACATGTTCCACCACACTGGACAGAAGACATTCAGTTGTAAAGAGTGTGACATGTCCTTTGTTAATAACAACAGGCTGACTACACACGTGAAGTATGCACACGAGGGAGCTTCTAAGCTGAAATGTACTGAGTGCTCCAAGACTTTCTTCAGACGTGACGAGCTCACCAAACACCAGGCCACACACTTGAATAAGAAGACATTCGGTTGTGATGACTGTGGCAAGAAGTTTAAGACTAAGCAGCTGTTGATTTGTCATACTAAGACTCACAGGAAGGAGCAGCCACGCTCGTGTCCTCTCTGTCCTCGAGCATTCATCAGGTTTGACTGCTTACTGAGACACTTCAGGTCTCGCCACAAGGAGCATTACAAAACTGCTATTTCAGAGGCGAAGAAGACAAAGTTTGAGATGATGAGGAAGGAGAAGGTGCCCGTACAGAAGGACATTACAATCAGGAAGCGTATGCAGACATTTGGTCCCGAACCAATCGCACCGTATGTGCTCACACATCTTAAGGAGATCTCTAAGGATGTGGAGTTCATCAGTTTGAAGAGCAAACTGAAACAGAAAACCAGTCAGAAGAAGGAACCAGTTGAAGAAGTGCCCGTGTCCATTACAGAATGTGATGTCACCGAAGAATTTGAAGTGGAGATTGTGGATATTCCTTTATCAGAGTCATACCTCGCTACTAGCATACAAGAACTACTTGAGTTGCTTATCGACAGGGAGAGCTTCGAGGCTTTCAATTGGTATAATCTGAGCGTCGATGATACTCTGCAAGGACTAATCGTCAAGTGCGGTCACACCCCAGCTGACGCCAGCATCACAGAGAGAGCGCAGAGACTTAGGGAGAATGCCAAGTTACTTCTTACCGTCGTTATAGACGACGCCGCTATACAAGCACTCTTTGAGACACAAACTGTGGATGAAGTCATACTCAGTGTGTTGCGTCTCGGAAAGTCCAGTACTTAA
- Protein Sequence
- MSKTRATRATANGKQKNDSLVIIKTPENGGPAEKIADVKTSLIQHMCNKCNKKYTTSVGLKRHLKFCNDSKNDINLKIPDAKTKRVENHNDLNSRNLNLLSENTRDSGIGIGEATNSTANSQASDESHNGSVEESTSASRKVVDRNPYEFDEELDDPLSLPHVNEDPSLCQCCGEDLATAHKAGPYKCEICIKYYKKKESFQEHNTNYHSTAPGAVKCNKCPIVCPDRTMLRDHEEVHNREFACDKCDKRFSRKYNLARHKQQRGCDPREKKVKMFECQACGNEFSRKDNLLTHLRMHLGTPANLKEYTCNYCGNKYRGRGAYTIHVRIHTGETPFACDFCPVAFRSKLALVKHRRRHTGEKPYGCSQCGKAFAAKETLNRHLLTHSEEKPYSCLKCDMSFIQMTQLRAHMFHHTGQKTFSCKECDMSFVNNNRLTTHVKYAHEGASKLKCTECSKTFFRRDELTKHQATHLNKKTFGCDDCGKKFKTKQLLICHTKTHRKEQPRSCPLCPRAFIRFDCLLRHFRSRHKEHYKTAISEAKKTKFEMMRKEKVPVQKDITIRKRMQTFGPEPIAPYVLTHLKEISKDVEFISLKSKLKQKTSQKKEPVEEVPVSITECDVTEEFEVEIVDIPLSESYLATSIQELLELLIDRESFEAFNWYNLSVDDTLQGLIVKCGHTPADASITERAQRLRENAKLLLTVVIDDAAIQALFETQTVDEVILSVLRLGKSST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -