Cdis020661.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756380.1:1641697-1650563[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.1e-05 0.0041 17.9 0.9 1 21 117 137 117 138 0.94 2 13 0.0075 0.34 11.9 0.3 1 21 252 272 252 273 0.95 3 13 0.052 2.3 9.2 1.1 3 23 282 303 281 303 0.92 4 13 0.034 1.6 9.8 1.9 1 23 309 332 309 332 0.95 5 13 7.2e-05 0.0033 18.2 2.3 3 23 340 360 338 360 0.97 6 13 0.00013 0.0057 17.4 3.1 1 23 364 386 364 386 0.98 7 13 0.00072 0.032 15.1 0.4 2 23 393 415 392 415 0.97 8 13 3.2e-07 1.5e-05 25.6 4.4 1 23 420 442 420 442 0.98 9 13 0.00024 0.011 16.6 5.0 1 23 450 472 450 472 0.98 10 13 1.3e-05 0.00057 20.6 0.4 1 23 478 500 478 500 0.96 11 13 0.057 2.6 9.1 0.1 2 20 507 524 506 526 0.92 12 13 1.2e-05 0.00053 20.7 2.4 1 23 553 575 553 575 0.97 13 13 5.6e-06 0.00025 21.7 2.5 2 23 582 603 581 603 0.98
Sequence Information
- Coding Sequence
- ATGATGGACCCTATAATGCTGTTGTCAGATCACAATGAGATCGAATCTCTGTGCAGATGTTGTCTCTCTCAAGACGTAGAGTTGAGACCTTTGTTTGTGACAAATGATGTCTTAAATTGTTTGCCAAGTCAAGTTGTTTCGCAAATTTGCGATgtaattATATGCCCAAATGACAATCTCCCATCACAGATTTGCTCAGTCTGTATACAGAAAATAAACATGGCGTATTCATTTAAATTGCAAGTGTTGAATTCTCAGAGAATTCTTAAAGAGCATTTCCACAATGCAAGAGGGTCAGCTTCAGGAAATGTGATTAAAACGTTGACGGATTTGTTGACACAAAAATTTTATAACTGTCCGTCATGCGATAAGAAATTTAGCACAGAATTCAATTTGATACGACATAAGAAGCTTTGTGATGCAAATAATGCCATCATGGCTCCTCCATTAGAAAATGTGCGAATTAAAGAAGAAACATTCTTAAAATGTGACGAAATAGACGAGAATCTAAATATGGCACTGAATTCCATAGACATGGATCAAATCGATAATATATTAAAGTCCGATCCATCTTTAACTTGTTCCATAGACGATAACGATATCTATGGAGCATTACCGTCTGTGGATATCAGAGATATTAAAACCTTACAAGATGTACGGCCAACACGAAGAAAATCGAAACGAAAGCGTGTTATTAAGAAGTACAATAGTTTGTCCAGATTTAAGAAAACGTTAAAGATGAAAAAGGGGACTTATATTTGCGATCATTGCGATGTTGATTTTAAAGAGTTGCGTTATTTGAAAGAACATATAAAAGTACTGCAATCCATTGGCAAGTCTGACTGCGTATTTTGCGGACAAAAGTTTGAGGAGAAACAACATCTTGTGAATCACATCACCGAGAAACACGATCTACACAAGCCTTATTTGTGTACAACATGTCAAGCTCGGTTTAGAGTGTGGAGTGCATTGCAGtgtCATATAAGGTCCAAGCATACAAAGGAGCGAGCCTGCTTATGCCCAAAGTGCCCAAAGACCTTCGTTTTGCAGAGAGATCTCAATAGACATTTAAAGAGTCACGATGCTCCATATACGTGCAACATTTGTGAAAAAACATTcaaatataagTTCACTCTGGCGACACACAAGAATAATCACAAGGGAGATAAGAGAAAGAAGTGTGAGGTGTGTGGACATGAATATAGCGGAGAAGCACAGTTACAGAGGCATTTGAAAATTGCACACACAGGCGAGTCCCACAGCTGTCCCGATTGCGACAAGGTGTTCACCCATGCGAGTCGTCTGCGCAGACATCAGCGAACTCACACAACTCCCAGTAGCAGACCTTTCCAATGCAACTTCTGCGAGAAGAGATTCAACTATAAACAGCATCTGATGAACCACGAAAGAATTCATACGCACACAAAGCCCTATTTGTGCAATATCTGTGGGAGAGGTTTCGTTCAAGCTGCCCATCTTCAGGTGCATCTAAAATAtcataaaagtcaaaagcggaTCGTCTGCGAATATTGTTCATTCTCGTTCACCCAAGTTCAGTTGAAAGCACATGTAGCGAAGTGTCAAAgagAATCGGTAATCAGCAAGGCGGTTCGGTCAAAGGAAGAAGGATCTACGAAGCAACCAGATGAAAATTCGTTTAATTGTTCAATTTGTCAAAAGACGTTTGTCAAAAAGGAATATTTGAAAAAACACATACAGAATCATACGAAGGAGGTAGCCACGCAATGcgaaatttgtaataaaaagttcAAAACGAAAGACAAACTTGACGAACACATGAGGAAACATAAGGCAAAGAAATTACCAGTAAAGAATTCTGTGAAAAAGGGTGCTTCTAAAAGAGATGCACGTATTAAAAAGACAAATCTGATAAAATCTAATTCACGAAAAGGTGTTGCAGATATTGACGATACTGAGAATGCTTCAAAAGATGTCGGGATCGTTAAAACGACTCAACAAAATCCCGCAGTTCAAAAGGGAGAAACTATTCCAATATTTGATAATATGAATGTTGATTCTGCATCTGGTTTTGTTACGAATGTGATAAACCGAGATTTGTGCAATGTTGGTGATTCAATCGGCACAAGGGTTGATAATTCAGTCGGCACAACAGCTGCTAATTTGATTGGCACAATGTCTGGTCGTTCATGTGACACAAAAGCTGTGAAGTTATATTTGAATCCAGATTACAGATTGGTTTCTAGTGGTGGGAAATTGCCATTAAATGCCCAGAGATTGCCGTTCAGCCCAAAGATGAATATGATAGTCAAtcaatcaaacaaaataaaatacgacCCTAAAAAGAAATCTGTCCGAAATAAGATATCGTCATTCATTCCAACAAATAAACTGAAAATTCACTCAAACGTTAAAATTGATCCAGTTTCTAGTAATTTGCTGTCAGCGGATTCAAATGATGCGTTGTCCATCCCTAGCACTACTAAAAATTCATTGACAAACGATGGAAATACATCTTCCACATTTATATCAAATGATTCCTTGGCAGATGATTCAGTTATATCTTCCAAATTGTTGTCAAACAATTCCTTGGCAAATGAACCAAATGCTCCTTCCACAACTGTTTTAAATGATTCCTTGGTGAATGAAACAAATACAACTTTATCATTTAATCCGAATATTTTATTGGCAAATGATTTAAACAGTATTCCATCAAATACAACATCTTCCACATCtgttttaaaaaagttattGACGACGGATTCTAATAAGCCTTGCACATCTATTTTAAGTAATTCTACGACTGTTTCGAATATTCCATCAACATTTGCAACAAATTCGTCTCAGACGAACGATTCAAACCCAACTTTAAAATTTATTCCAAATATTTCGTTGCCAaatgatttaaataatattgcTACAACATTTACTCCAAATGAACCAAATAAAACTGTAACATTTATATTTACTAAATCTGCATCAAATAATAGCTTGTTGAGAGGTTCAAATAAATCATCACAATCCACATTCATTCCAAATGTTTCCTTGGCAAATGCTCCGAATATACCTTCtaaatttatatcaaaaaacacCTTGGCAAATGGTCCAGATGCAACATTAGCATTCATTCCGAATTCTTCATTGGCCGATAAATCTAATGTAACATTAACGTTTGTTCAAAGTAATTCGTTGTCAAATGATCCGAATACTTCTTCCACGTTTATAACAAACAATTCCTTGGCAAATGACTCAAATGCATCTGTAACATTTATTCCTAACAATCCAGTGGCAAGTGACCAAAATTTAACATTTATTCCAAACAATTCATTGCCAAATGACCTAAATGCAACTTTAACATTTATTCCAAGTAATTCCTTGGCAAATAATTCAATTATGTCTTCCACCTTGTCAAATGATTTAAATGCATCTTCCACACTTATATCAAATAATTCCCTGGCTAATGATCCAAATATGTCTTCTTCCACATTTATATCAAACAATTCCTTGGCAAATGACCCAAGTGCAACTATAACATTTATCCCTAATAATGATTTGCTCTTGAGTGAATCTATGAATCAAACTGCCAATAGTTCTCAATCAGTTATCAGTGCTTCTCAACAGGTTGGGTCGAGTGATAATCTTGTTTATGGTGTTGATAATCAAATTTTGACACCCAATCAGAATCAGGACCTAAATTCTTTGACTCCAATCGGTCAGTATGTTGTTTTGCGTAAGGATAGCTcgataaaaaactaa
- Protein Sequence
- MMDPIMLLSDHNEIESLCRCCLSQDVELRPLFVTNDVLNCLPSQVVSQICDVIICPNDNLPSQICSVCIQKINMAYSFKLQVLNSQRILKEHFHNARGSASGNVIKTLTDLLTQKFYNCPSCDKKFSTEFNLIRHKKLCDANNAIMAPPLENVRIKEETFLKCDEIDENLNMALNSIDMDQIDNILKSDPSLTCSIDDNDIYGALPSVDIRDIKTLQDVRPTRRKSKRKRVIKKYNSLSRFKKTLKMKKGTYICDHCDVDFKELRYLKEHIKVLQSIGKSDCVFCGQKFEEKQHLVNHITEKHDLHKPYLCTTCQARFRVWSALQCHIRSKHTKERACLCPKCPKTFVLQRDLNRHLKSHDAPYTCNICEKTFKYKFTLATHKNNHKGDKRKKCEVCGHEYSGEAQLQRHLKIAHTGESHSCPDCDKVFTHASRLRRHQRTHTTPSSRPFQCNFCEKRFNYKQHLMNHERIHTHTKPYLCNICGRGFVQAAHLQVHLKYHKSQKRIVCEYCSFSFTQVQLKAHVAKCQRESVISKAVRSKEEGSTKQPDENSFNCSICQKTFVKKEYLKKHIQNHTKEVATQCEICNKKFKTKDKLDEHMRKHKAKKLPVKNSVKKGASKRDARIKKTNLIKSNSRKGVADIDDTENASKDVGIVKTTQQNPAVQKGETIPIFDNMNVDSASGFVTNVINRDLCNVGDSIGTRVDNSVGTTAANLIGTMSGRSCDTKAVKLYLNPDYRLVSSGGKLPLNAQRLPFSPKMNMIVNQSNKIKYDPKKKSVRNKISSFIPTNKLKIHSNVKIDPVSSNLLSADSNDALSIPSTTKNSLTNDGNTSSTFISNDSLADDSVISSKLLSNNSLANEPNAPSTTVLNDSLVNETNTTLSFNPNILLANDLNSIPSNTTSSTSVLKKLLTTDSNKPCTSILSNSTTVSNIPSTFATNSSQTNDSNPTLKFIPNISLPNDLNNIATTFTPNEPNKTVTFIFTKSASNNSLLRGSNKSSQSTFIPNVSLANAPNIPSKFISKNTLANGPDATLAFIPNSSLADKSNVTLTFVQSNSLSNDPNTSSTFITNNSLANDSNASVTFIPNNPVASDQNLTFIPNNSLPNDLNATLTFIPSNSLANNSIMSSTLSNDLNASSTLISNNSLANDPNMSSSTFISNNSLANDPSATITFIPNNDLLLSESMNQTANSSQSVISASQQVGSSDNLVYGVDNQILTPNQNQDLNSLTPIGQYVVLRKDSSIKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -