Basic Information

Insect: Ceraclea dissimilis
Gene Symbol: -
Assembly: GCA_963576895.1
Location: OY756369.1:5802039-5804096[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.31 14 6.8 4.0 1 19 191 209 191 212 0.82

2 12 0.16 7.3 7.7 0.5 1 23 303 325 303 325 0.97

3 12 0.005 0.22 12.4 1.8 2 23 365 386 364 386 0.97

4 12 8e-06 0.00036 21.2 5.0 1 23 394 416 394 416 0.98

5 12 1.7e-05 0.00078 20.1 0.4 1 23 422 444 422 444 0.97

6 12 1.2e-05 0.00054 20.7 4.6 1 23 450 472 450 472 0.98

7 12 1.9e-07 8.3e-06 26.4 1.0 1 23 478 500 478 500 0.96

8 12 4.7e-06 0.00021 21.9 0.8 1 23 506 528 506 528 0.99

9 12 7.2e-06 0.00033 21.3 0.2 1 23 534 556 534 556 0.98

10 12 0.00059 0.027 15.3 1.5 1 23 562 584 562 584 0.99

11 12 1.4e-06 6.5e-05 23.5 1.5 1 23 590 612 590 612 0.99

12 12 2.9e-06 0.00013 22.6 1.5 1 23 618 640 618 640 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.31	14	6.8	4.0	1	19	191	209	191	212	0.82
2	12	0.16	7.3	7.7	0.5	1	23	303	325	303	325	0.97
3	12	0.005	0.22	12.4	1.8	2	23	365	386	364	386	0.97
4	12	8e-06	0.00036	21.2	5.0	1	23	394	416	394	416	0.98
5	12	1.7e-05	0.00078	20.1	0.4	1	23	422	444	422	444	0.97
6	12	1.2e-05	0.00054	20.7	4.6	1	23	450	472	450	472	0.98
7	12	1.9e-07	8.3e-06	26.4	1.0	1	23	478	500	478	500	0.96
8	12	4.7e-06	0.00021	21.9	0.8	1	23	506	528	506	528	0.99
9	12	7.2e-06	0.00033	21.3	0.2	1	23	534	556	534	556	0.98
10	12	0.00059	0.027	15.3	1.5	1	23	562	584	562	584	0.99
11	12	1.4e-06	6.5e-05	23.5	1.5	1	23	590	612	590	612	0.99
12	12	2.9e-06	0.00013	22.6	1.5	1	23	618	640	618	640	0.98

Sequence Information

Coding Sequence: ATGGAGGTTGATTACATAAGTGATTCCCCTTCGGGATCTGTCGAGGTGTGTCGAGCCTGTATGAGTAGAGACAATGATTTGAAaccattatttattaattacaaagaTTCTCATCCAACATTGCATGAGATCTTATTACATGTCACTGGattaaatataaatgaaaatgatGGTCTTCCCAATCAGATATGTACCTCGTGCATATCATTAGCCAAAAGTGCTTTACATTTTAAAGAGATGTGCTATCATTCCGATGTGAATTTCAGAAAAAGTCTATCTGGTGAAACTACTATTATAAAATCGTTCATTAAGAAAGAGTGTGATTCCTTCATCAATTCAGATGGAAATTCACTTAATTTTGTTAAAGGTAATAAAGAAAATGTCGAACAACTCATGGAAACATCAGACAACAGTAACAAAGGTTCAACCAAAGGCAATAAAGCTTCTTTAGCTCCTTATCAGTGTGGAGTTTGTTgtaatacttttaatttatgCAATAAGTTAAAGGAACATGTGAAAGCCTTCCATGGTAATTACTTAAACACaactaaactaaataataaagCTAAATATTCCTGTACATTATGTTCAAAAACATTTCGATCAAAGAAAGGACATTCCTCGCATCATAAAAGATGTTTCTCTCGAACTGAAAAGAAAGTCAAAGTGAAGCAAGAAGTTGTCAGTGACAGTGATAGCGACACTCCCCTGTCTGAGAGAATTAATTCACAACGTTCACTGGACACATTGCTACCAGTCAAGACTGATTTAAAAGACGATGTTCTTATGGAAAATACAGAATCTCACGAACCAGATACCTATTATGATGATACAGACATGTCATACCCTTACGATGACATTAAAGTAGAAGAATGTGACCTGAAGGGATATGAAGAGGAATCAAAATATTCTTGTGAGAAATGTAATTTAACATTAACCAAGGTAATGTACGATGCCCACATGAAAAGTGTGCATTCTGAAAAAAAGAGATCCccaagaaaacgaaaaataataacattaaacgGAGAAATCACAGATGCACAGACAGTAGGAGATAATGGAGTAGATTGGCTAATTCCTGTGCCTTCCCTTAAATGTACGCAGTGCGAGAGAAAGTTCTTAAAGGAATCATCCCTTAATGCGCATCTGAAGAAACACGAGAAGGAATTAAATGAGGTTCACAAATGTGGTACTTGCAACAGGGAGTTCAAGAGAAAAGCTCATTTAGAAAATCATATGTTGACACATTCTATAGACAAAGGTTTCAAATGTAGTTTATGTCCCAAATCATTTACCATACAGGAGAGTCTCAACACTCACATCGCCAATCACAAAGGAGTGAAGAAGCATCAATGTACACACTGTGACAAAGGATTCAATATGCTATCAACTCTCAAGGACCACATTCGCACTCACACTGGTGAGAAACCATTCCTGTGTTCTATCTGCGGTAGAGGATTCAGTCAGAGCACTAATCTCAAGGAGCATATGAGAAGACATCAGGGATATAAACCATTCAAATGTGATTTCTGTAGTCAGACGTTTGTATCCAAGGGCGAATTAGAAGCCCACTTGAGGAAGCACAGTGGTGCGCATCCGTTTGTGTGTGACGAGTGTGGTGGGGGATTTACTACATCGAGTTCCCTGGTGAAGCATAAGAGGATTCACAGTGGAGAACGTCCTTACAAGTGTGACTTTTGTCCTATGAGGTTCACGGCTTTAGGGACTATGAAAAATCACAGACGAActcatactggtgaaaaaccttacAAATGTCAGTATTGTGAGAAGGCCTTTGTACAGAAGAATGATCTGGTGActcacacacgcacacacactgGAGAACGCCCCTATGTTTGTACTATATGTGGACACGCCTTCAGACAGAGCTCCGCTCTCAAAACACACTTCAAGATCCACGGAGGACAAACCGATCTTACGCCTGTAAGTGTTGCACCACCCAGACCGGAAATTGATTTGCTGGACAGATCTACAATGGAAGAAAGCTCCTCATCTATGACAATGATGACACCAAAAAGTGAAAACAGTAATCTTTAG
Protein Sequence: MEVDYISDSPSGSVEVCRACMSRDNDLKPLFINYKDSHPTLHEILLHVTGLNINENDGLPNQICTSCISLAKSALHFKEMCYHSDVNFRKSLSGETTIIKSFIKKECDSFINSDGNSLNFVKGNKENVEQLMETSDNSNKGSTKGNKASLAPYQCGVCCNTFNLCNKLKEHVKAFHGNYLNTTKLNNKAKYSCTLCSKTFRSKKGHSSHHKRCFSRTEKKVKVKQEVVSDSDSDTPLSERINSQRSLDTLLPVKTDLKDDVLMENTESHEPDTYYDDTDMSYPYDDIKVEECDLKGYEEESKYSCEKCNLTLTKVMYDAHMKSVHSEKKRSPRKRKIITLNGEITDAQTVGDNGVDWLIPVPSLKCTQCERKFLKESSLNAHLKKHEKELNEVHKCGTCNREFKRKAHLENHMLTHSIDKGFKCSLCPKSFTIQESLNTHIANHKGVKKHQCTHCDKGFNMLSTLKDHIRTHTGEKPFLCSICGRGFSQSTNLKEHMRRHQGYKPFKCDFCSQTFVSKGELEAHLRKHSGAHPFVCDECGGGFTTSSSLVKHKRIHSGERPYKCDFCPMRFTALGTMKNHRRTHTGEKPYKCQYCEKAFVQKNDLVTHTRTHTGERPYVCTICGHAFRQSSALKTHFKIHGGQTDLTPVSVAPPRPEIDLLDRSTMEESSSSMTMMTPKSENSNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -