Basic Information

Insect: Ceraclea dissimilis
Gene Symbol: -
Assembly: GCA_963576895.1
Location: OY756358.1:24524681-24526411[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4e-05 0.0018 19.0 1.8 2 23 228 249 228 249 0.96

2 12 6.1e-05 0.0027 18.4 5.4 1 23 255 277 255 277 0.98

3 12 3.8e-07 1.7e-05 25.4 0.5 1 23 283 305 283 305 0.98

4 12 0.00023 0.01 16.6 0.7 1 23 311 333 311 333 0.98

5 12 0.0012 0.053 14.4 2.4 1 23 339 361 339 361 0.98

6 12 0.0016 0.073 13.9 2.5 1 23 367 389 367 389 0.98

7 12 5.5e-06 0.00025 21.7 0.2 1 23 395 417 395 417 0.96

8 12 1.1e-06 4.8e-05 24.0 0.5 1 23 423 445 423 445 0.98

9 12 1.8e-05 0.00083 20.1 2.5 1 23 451 473 451 473 0.97

10 12 1.5e-05 0.00066 20.4 0.7 1 23 479 501 479 501 0.99

11 12 0.00015 0.0066 17.2 1.2 1 23 507 530 507 530 0.96

12 12 0.0014 0.062 14.2 2.5 1 23 536 558 536 558 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4e-05	0.0018	19.0	1.8	2	23	228	249	228	249	0.96
2	12	6.1e-05	0.0027	18.4	5.4	1	23	255	277	255	277	0.98
3	12	3.8e-07	1.7e-05	25.4	0.5	1	23	283	305	283	305	0.98
4	12	0.00023	0.01	16.6	0.7	1	23	311	333	311	333	0.98
5	12	0.0012	0.053	14.4	2.4	1	23	339	361	339	361	0.98
6	12	0.0016	0.073	13.9	2.5	1	23	367	389	367	389	0.98
7	12	5.5e-06	0.00025	21.7	0.2	1	23	395	417	395	417	0.96
8	12	1.1e-06	4.8e-05	24.0	0.5	1	23	423	445	423	445	0.98
9	12	1.8e-05	0.00083	20.1	2.5	1	23	451	473	451	473	0.97
10	12	1.5e-05	0.00066	20.4	0.7	1	23	479	501	479	501	0.99
11	12	0.00015	0.0066	17.2	1.2	1	23	507	530	507	530	0.96
12	12	0.0014	0.062	14.2	2.5	1	23	536	558	536	558	0.96

Sequence Information

Coding Sequence: ATGTCGTTCCAGTGTGTATTCTGTTTAGAAACATTTCACGGATCTGTGTATCTCCCTGAACATTTCAAATCGTGTAAGGGACGGACAAAACAAATGCTAGGCATATTCTCTGATTCAAACGAGGAGGAAAcaattgaaaacaaaacaaatgtaATCAACGAAATGTCAGACAGATCAAAAAATAGTCATTATATTCacaatttacaatataataatgacaaCCAACAGAGTATAAATAACTTTGCGACATGTTTAGAATTCAAAAGTGAAAATCAAACTAACAATTGTAAATCTCCAATACAAGATACGAGTCTGACTAATATTTCTAACAGTAGTTATTATTTAAATCATTACAATGCTTCAGATGAAAGAATCTACGAAGTGAAGTTAGAAACAGGTGGCGAGAGGAACGGAAATGAAGGGACTGATTTAAAATTGGATTGTGAAGAATGTGTTCTTAATTCAAAATCTAACTGTCATAATGCTTCATCAACAATGCATGATGTTTGCAACCCCGGTGTGGCAATAAAATGTCCTAAAGCTAGTGGAAATGTCGATGTAAATAAAGCAAACTTGAATAGAAAGGATGGTTTAAATTGTACAAAGTCTAGAAGACAATATATGACGAAAAAACGATTAAAGAAATTGAtaaaagataaagaaagatCGAATAGACTTAATGTGTGTTTACAGTGTAAGAAAATATTCTCTACGCCCAGTAGTCTTAACAAACATAAGAAGAATCATTTGAACATTAAGCAGTTCACGTGTAATGTTTGCAATAAACAATTCAGACACGCCTGTGATTTATCACGTCACTTGAAAATTCACAGTGACTCGAAGGAATATTCCTGCTCCAAGTGTGACAAAAGTTTTGTAGATAAGGGACAGTTGTCGGCGCATTTGAAAGTCCACTTGGACGTGAAAAATTATATCTGTGATTTCTGCGGCAGACAATTCTTAAGATCCAGCGGACTAAAGGAACATAGAAGAATCCACACGCAAGAGAAATTGTTTCGCTGCGATTTATGTAACGAAAGTTTCATACACAGAAAcgtttataaaaatcatttaataACTCATACGGGGAATCTCGCTTACAAGTGTCCAACATGTTTACGTTGTTTCAAGACTAACGCAATATTAAAAACTCATTTATCCGTGCACTCGAATGTGAAACAATATTTGTGTTTAGAATGTGGGAGAGCGTTTAAAAGAATCAGTAATTTAGAAGTGCATAAAAGAATTCATTTGAATCTACGGCCATTCCCTTGTTCCTTATGTCCCAAAGCGTTTCGCGTTAAAAGTAGATTGAATATTCACATGCGTACGCACACGGGATATCGTCCTCATCAatgtacgcattgctccaaagCTTTCGCTCAATCGGGAGACTTGAAAATACACGAACGCTTACACACCAACACTAAACCGTACACTTGCGGCGTGTGTTTTAAATCATTCGTCGATTCCGGGAGATTGACGGCACACAAGCGCACGCACACCGGCATCAAGACACATTTTTGTCCCAATTGTAACAAAGGGTTCTCTGGTATCAGCAGTATGAAGAATCATATAAGATCTGTACATTTGAATGAAAAGCCTTTTGCTTGTAGTATTTGCTGTAAGAATTTCTCGCGTGCTAGTTCCCTGAAGGCGCACAGCAAGTTGCATTCTGTTGAAGATAAGAGTGAGGATCATATAACACATGCGGTACACAGTTTTGAATAA
Protein Sequence: MSFQCVFCLETFHGSVYLPEHFKSCKGRTKQMLGIFSDSNEEETIENKTNVINEMSDRSKNSHYIHNLQYNNDNQQSINNFATCLEFKSENQTNNCKSPIQDTSLTNISNSSYYLNHYNASDERIYEVKLETGGERNGNEGTDLKLDCEECVLNSKSNCHNASSTMHDVCNPGVAIKCPKASGNVDVNKANLNRKDGLNCTKSRRQYMTKKRLKKLIKDKERSNRLNVCLQCKKIFSTPSSLNKHKKNHLNIKQFTCNVCNKQFRHACDLSRHLKIHSDSKEYSCSKCDKSFVDKGQLSAHLKVHLDVKNYICDFCGRQFLRSSGLKEHRRIHTQEKLFRCDLCNESFIHRNVYKNHLITHTGNLAYKCPTCLRCFKTNAILKTHLSVHSNVKQYLCLECGRAFKRISNLEVHKRIHLNLRPFPCSLCPKAFRVKSRLNIHMRTHTGYRPHQCTHCSKAFAQSGDLKIHERLHTNTKPYTCGVCFKSFVDSGRLTAHKRTHTGIKTHFCPNCNKGFSGISSMKNHIRSVHLNEKPFACSICCKNFSRASSLKAHSKLHSVEDKSEDHITHAVHSFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -