Cdis017471.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756376.1:4575773-4579426[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.052 2.4 9.2 0.4 1 23 162 185 162 185 0.92 2 16 0.36 16 6.6 0.8 1 23 221 243 221 243 0.97 3 16 0.092 4.1 8.4 6.6 1 23 249 272 249 272 0.96 4 16 0.0037 0.17 12.8 3.8 1 23 308 330 308 330 0.98 5 16 3e-06 0.00014 22.5 1.4 1 23 336 359 336 359 0.96 6 16 9.8e-05 0.0044 17.8 0.2 1 23 365 387 365 387 0.96 7 16 5.7e-05 0.0026 18.5 2.3 1 23 393 415 393 415 0.97 8 16 0.00017 0.0078 17.0 4.6 1 23 421 443 421 443 0.98 9 16 4.5e-05 0.002 18.9 1.7 1 21 449 469 449 470 0.94 10 16 0.015 0.68 10.9 0.9 1 23 532 555 532 555 0.92 11 16 0.04 1.8 9.6 2.9 2 23 707 729 706 729 0.94 12 16 4e-05 0.0018 19.0 0.8 1 23 735 757 735 757 0.95 13 16 0.00052 0.023 15.5 0.9 1 23 763 786 763 786 0.96 14 16 0.0012 0.054 14.4 1.5 1 23 792 814 792 814 0.97 15 16 2.9e-06 0.00013 22.6 1.3 1 23 820 842 820 842 0.98 16 16 3.2e-06 0.00014 22.5 2.4 1 23 848 871 848 871 0.98
Sequence Information
- Coding Sequence
- atgtTTCTACAAAATGTCATTGAATCGACACACATGATGGGTACAACCAAACCTTCACTGGTACCATTTAGAAGAAATGAAATAACTGAGACCATTACAAACTTACAGCAAAATAAAGCGGGAGACAGCACTCCTAAtaaatctaattataatcagcgCAATATGTTTGTAAGCAAAATTGTGATTGCCGCTGCAATTTGTTTCAGGTCCAACCTGACTTTACGCCAAGCCCACACAACACATTCTGATATACTTGTCAGTAGAACATTGTCTGATAATGTCTCGgatgatattaataatttgaGGTACAAATGCAACCTCTTAAAAAGTCTCATTGCCAAGTTAAGTCCACATGTGGAAGAGTATCACAGTGAAGAACCACCTAATACACGGAGGAGTGATGATCATGATGAAGATGAATCTCAGCCACTCCCCAAATTGGAGAAGAATGTcaaaatagaaatagatatatTAGAGCCCGCGTACCCTTGCACTAGGTGCACTTACGTAGGAACAACACAAGAAATGTTAAAGGAGCACACAGATCAGCAACATAGTAATTTGACTAGTCTTTTCAAAAAAAGCACTCGCCGTACACATGATCCTATTACTCGCCAGGAGCTAGAATATGCTAAGGTTACAGTGAATGACAAAACTAAATACAAATGTTTTATATGTGGACTACTTCTCTACAGTGTTAAAAATTATCTAGCTCACAAAACCACTCATTCCGATGACAAATTATTCCCgtgtaaaatttgtaaaaaaaagtttggtaCGTTTCACTCCCTAAAGTTTCATATGAAACATATACACCAAATAAATAACGTCCAAGACATTGATACGGACAGAAGCAAAAACTTAATGgagaaatataatgaaatagaaaaggCTAAAGTATGTATTGATGGGCGCACCCACTATAAGTGTGGAACATGTGAAAAGGCATTCCATAGATTGAGTTTCTATACAACTCATATGACCCTGCACACTGGAGAGAAGAGGTTTGTGTGTCATATTTGTGGGAAACCCTTCCGGCTCAAAACCCAATTGACAAGACACGTGAAACTCATCCATAACAAGGACAAAAGATTCTTATGTGAAGTGTGCAATAAGAAATTTGGAACACCAATCGACTTGGTCGAACATCGCAGGACGCACACTGGGGAGAGACCCCATGTTTGTACAAAGTGTGGGAAGAAATTCAAACAAAAAGCTGCTTTGTATATTCATAACTTGACACACACAGATCACTTCCCTTTCCAATGTACTCAGTGTGATGGCAAATTTAGAAGACATTCGCAGTTGAAATACCATATGGCCAAACACACTGGGAATAAACCTCATGTGTGTGAGACTTGTGGACGAAGTTTCATCACTAAGATTCATCTCACTAAGCACTATAaATTGTTTATTGGAAATCCGCATAGTGTGATTGGCATCCTTTCTTCCAGATTACTGCGTGGAAGATGCCCACCAGAAGTGACTAAAGGCAAGAAACTTGCCACAGCCAGAGCGCAGCGTGAATTGCGcacaaatatattaaaacaagCCAATGTAACTGAGAAGGCCCAGTCGACTGTAATCAATCCTCACATATGTTCATTCTGTGCGCAATCCTTTAAAGATTCCGATGTACTCACTAATCATTTGTTAGACTCCCACGCTGACTTGCTGTTTCGATGTGATGTGTGTAGCCTGTACTTGGATAGAAAAGAGCTTATACCTCACATGTCTAAGCATGCGGAGCAATATAATGAAAACTTGCGGAAGCGAGAGAGTACAGTTACTTCTAAGCAACCTAATAATAAGAATACTAACACTAGTTGTAATAAACAATCTTCCACTAACAAAAAGACTGAAGATCTCAAAACTGTACCGCAAAATAATACTGCAAATGAAGCCGATGCCTTCTCAACAACAAGTCGATCTAACGATGGCTTTGGGCCCTTACCAGAATCTGTATTCGAAGCCATTAAAGATGCGGATGAGACTGCAACTGCGGAAGCCGCAAAAACACCGGAGACAAAGGTTGAAGAAGCACCTAAAGCAACTCAAAGCCAAAATAATCGTGAGACTgaagataaaataaagaaaaatagcgAGCCTAATAAAATAGTGTGCCCAATATGTTCTAAAGAATTTAGATTAGCATCTAGTTATCATTATCATAAGAAACATTACCACGGAGGGCTGAAGGAGCATGTGTGTCACGTGTGTGGCAGAAGCTTTGCAGTGAAGAGTGCCTTGAAGGAACATGGCTCCATACATCTGGGCACCAAGCCGTACTCCTGTCCACAGTGTTCCAAAGAGTTCCGTACTAAGGCCAGtgtttacatacattataaaaacattcattGTGAAACCAAACAATTCCCCTGTACCATGTGCAATCGATCCTTCAGGTGGAAACAGAAACTACTCAGACACATCTCGAGCCATACCAAGGAGAAAAAATACTTCTGCCCCAAATGTAACAAAGGTTTCGGTGTCAAATATGATCTCACCAGGCACATGAAGTCACACGTTGAGTCCAAAGCATATTCGTGTGACAAGTGTGACAGGCCATTCTCACAACTCAGATATCTCAAGAAACACATTAAGACTAAGCATTCTACTGCACCGCCTGAGATACAACAACAGACTAATGTTACATAG
- Protein Sequence
- MFLQNVIESTHMMGTTKPSLVPFRRNEITETITNLQQNKAGDSTPNKSNYNQRNMFVSKIVIAAAICFRSNLTLRQAHTTHSDILVSRTLSDNVSDDINNLRYKCNLLKSLIAKLSPHVEEYHSEEPPNTRRSDDHDEDESQPLPKLEKNVKIEIDILEPAYPCTRCTYVGTTQEMLKEHTDQQHSNLTSLFKKSTRRTHDPITRQELEYAKVTVNDKTKYKCFICGLLLYSVKNYLAHKTTHSDDKLFPCKICKKKFGTFHSLKFHMKHIHQINNVQDIDTDRSKNLMEKYNEIEKAKVCIDGRTHYKCGTCEKAFHRLSFYTTHMTLHTGEKRFVCHICGKPFRLKTQLTRHVKLIHNKDKRFLCEVCNKKFGTPIDLVEHRRTHTGERPHVCTKCGKKFKQKAALYIHNLTHTDHFPFQCTQCDGKFRRHSQLKYHMAKHTGNKPHVCETCGRSFITKIHLTKHYKLFIGNPHSVIGILSSRLLRGRCPPEVTKGKKLATARAQRELRTNILKQANVTEKAQSTVINPHICSFCAQSFKDSDVLTNHLLDSHADLLFRCDVCSLYLDRKELIPHMSKHAEQYNENLRKRESTVTSKQPNNKNTNTSCNKQSSTNKKTEDLKTVPQNNTANEADAFSTTSRSNDGFGPLPESVFEAIKDADETATAEAAKTPETKVEEAPKATQSQNNRETEDKIKKNSEPNKIVCPICSKEFRLASSYHYHKKHYHGGLKEHVCHVCGRSFAVKSALKEHGSIHLGTKPYSCPQCSKEFRTKASVYIHYKNIHCETKQFPCTMCNRSFRWKQKLLRHISSHTKEKKYFCPKCNKGFGVKYDLTRHMKSHVESKAYSCDKCDRPFSQLRYLKKHIKTKHSTAPPEIQQQTNVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -