Cdis021384.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756381.1:2744060-2745925[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00018 0.008 17.0 2.9 1 23 128 151 128 151 0.96 2 15 0.00018 0.008 17.0 1.4 1 23 157 179 157 179 0.98 3 15 0.012 0.56 11.2 3.2 1 20 184 203 184 206 0.94 4 15 0.0012 0.053 14.4 1.9 1 23 212 235 212 235 0.96 5 15 0.0012 0.055 14.4 2.4 1 23 256 278 256 278 0.98 6 15 3.1e-05 0.0014 19.4 1.6 1 23 338 360 338 360 0.98 7 15 4.6e-05 0.0021 18.8 0.4 1 23 366 388 366 388 0.98 8 15 1.3e-06 5.8e-05 23.7 1.4 1 23 399 421 399 421 0.99 9 15 7.7e-05 0.0035 18.1 3.6 1 23 426 448 426 448 0.98 10 15 0.00067 0.03 15.2 0.2 1 23 454 476 454 476 0.98 11 15 2.9e-05 0.0013 19.4 0.4 1 23 482 504 482 504 0.98 12 15 0.00022 0.0098 16.7 1.9 1 23 510 532 510 532 0.98 13 15 1.6e-05 0.00071 20.3 1.1 1 23 538 560 538 560 0.98 14 15 0.00095 0.043 14.7 2.8 1 23 566 588 566 588 0.98 15 15 0.00045 0.02 15.7 0.3 1 20 594 613 594 616 0.94
Sequence Information
- Coding Sequence
- ATGGATGTTCATATTAAACAGGAACCTGTGGAAGAAGTTGATTATGTCTCCCCTGCTGATATTAAAGTGGAAactcaagaaacaaaggatgAAGCGGCGTCCTTTAGTTGTCAGACTTTGATGGATATTAGTGGCGaggtgaaacaagaacctactgaggagaGTGAATATACAGACATAGGTCGGCATGGCAAATTACAAAGAGGTTATGGTTGGACGGAGGAGAAGTCTATTGATTGTGGGACTTTATTCAAGACTAATGTCATTGTGAAACAAGAGAATGTCGAGGAAGATATTGATGTGAAATATGAACCTGATGTTGAGTCTATATGTGAGAGAGATTCTGAGAAATCAACCGTcaaatatgacaaaaaagtgAATTTCGCGTGTGATATTTGCAAGAAAACCTTTACCATGTTGTGTAATTTAAATATACATAAGCGAATTTTCCACCCCGACGTTCAATATTTCGAGTGCGACGTTTGTAAGAAAGCGTTCTCGAAGAAAGTGACTTTAGacgaacataaaaaaaaacacgtcaAAAAATCGTTTAAGTGTGATGAGTGTCAGGAAACATTTGCACTAAAAACTCTTTTAAACAATCATAAACAATGTCACAAAgacgaaaaaccttttaaatgCGATATGTGCATGCGATCCTTTGCTAAGGCGGCACATTTAAAAGCGCATAAACGATTTATTCACAAAAAGCAAACAGTCACAGTAGGGTCCCAAGTAAAAGAAGAATTTGATAACGTCAATAAATTTGAGTGTGATATCTGCCAGCAAACGTTCTTTGAAGAATCGCATTTTAACTTACACGTCAAAAGTCACAATGAGACAAGATCATACTCGAACAAAAATAAACGAAATCACAATAACGTTGAAAATGTTGTTGCGTCTCATGAAGTCCGTGACACTAAGTGTGATAAGGTCCAGCAAACGATCACAGGAAAATCGCAGCTGAATGTAGAAAAACAAAGTCATAAAATATCTCCAGAAgataaaccttttgagtgtgatatttgcaaaaAGACATTCTCGAAATGGATGTTTTTACAGTcccataaacaaattcacaatGACAAAGCATCTTTTGAATGCGAATTATGTTCGGCGACGTTTACAATGAAACAATATCTGAGTGCACACATGCGAGTTCACAATAAACTATTGCTCTTCGCTCCAAGGACATACAAGTGCGATATTTGCGATAAAGTATTCGGGAGAAATTATCGTCTAACAGTGCATAAACGAACTCACGTTCCACAAACGTTTGAATGTGACGTATGTCAACAGTCATTCGCGAAAAAACAACACTTGAATACACACAGAAAATCTCACACCATCACACAAACTTTTGAGTGTGACGTCTGCCAGCAACCGTTTAGACGAATGACGGATTTAGACGCACATAAAGAAACTCACGTTgtgaaaaaaacttttacctGCGACGTTTGCCAGGAAGTGTTTGAGGAAAAGACACAATTGAACCTTCATATGCAGTCTCACAATGACAAGAAGACGTTTTCGTGTGATATTTGCCATGAAGCGTTcgcaaaaaaatcatatttaggCTTACACAAACGAAGACATAGTCAAAccaaaccttttgagtgtgataCATGCTGGAAGACATTCAGGCTGGAATCGTATTTAAAGGTGCATAGACGCGTTCACAGTGGGTATAAACCTTTCAAGTGCGATGCCTGTAATGCGTCGTTCACGCAGTTGCATTATTTGACTTCGCATAAGAAAGTCCATAGCGACGTTAAGCCTTTTAAGTGCGATGTTTGCAAGCAAGCCTTCGTACAGTTATCATATTTAAATGCACACAAACCAATTCACGCCACTTGGAGTAAATAA
- Protein Sequence
- MDVHIKQEPVEEVDYVSPADIKVETQETKDEAASFSCQTLMDISGEVKQEPTEESEYTDIGRHGKLQRGYGWTEEKSIDCGTLFKTNVIVKQENVEEDIDVKYEPDVESICERDSEKSTVKYDKKVNFACDICKKTFTMLCNLNIHKRIFHPDVQYFECDVCKKAFSKKVTLDEHKKKHVKKSFKCDECQETFALKTLLNNHKQCHKDEKPFKCDMCMRSFAKAAHLKAHKRFIHKKQTVTVGSQVKEEFDNVNKFECDICQQTFFEESHFNLHVKSHNETRSYSNKNKRNHNNVENVVASHEVRDTKCDKVQQTITGKSQLNVEKQSHKISPEDKPFECDICKKTFSKWMFLQSHKQIHNDKASFECELCSATFTMKQYLSAHMRVHNKLLLFAPRTYKCDICDKVFGRNYRLTVHKRTHVPQTFECDVCQQSFAKKQHLNTHRKSHTITQTFECDVCQQPFRRMTDLDAHKETHVVKKTFTCDVCQEVFEEKTQLNLHMQSHNDKKTFSCDICHEAFAKKSYLGLHKRRHSQTKPFECDTCWKTFRLESYLKVHRRVHSGYKPFKCDACNASFTQLHYLTSHKKVHSDVKPFKCDVCKQAFVQLSYLNAHKPIHATWSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -