Cdis017999.2
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756376.1:14429742-14449085[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.057 2.6 9.1 2.3 1 20 199 218 199 220 0.93 2 24 0.00023 0.01 16.6 1.1 1 23 224 247 224 247 0.93 3 24 0.21 9.3 7.3 2.5 3 20 346 363 342 368 0.84 4 24 0.0005 0.022 15.6 0.4 1 23 378 401 378 401 0.95 5 24 0.082 3.7 8.6 0.8 2 23 408 429 407 429 0.97 6 24 3.7e-05 0.0017 19.1 0.2 3 23 437 457 435 457 0.97 7 24 0.023 1 10.4 5.3 1 23 463 485 463 485 0.96 8 24 0.00047 0.021 15.6 2.5 1 23 491 513 491 513 0.97 9 24 1.5e-05 0.00068 20.3 2.8 1 23 519 541 519 541 0.99 10 24 0.22 9.9 7.2 0.2 1 23 546 569 546 569 0.95 11 24 0.17 7.7 7.6 3.8 1 21 767 787 767 788 0.95 12 24 3.1e-05 0.0014 19.4 0.8 1 23 792 815 792 815 0.96 13 24 3.5 1.6e+02 3.5 0.2 1 23 914 938 914 938 0.68 14 24 0.046 2.1 9.4 3.2 3 23 947 968 945 968 0.95 15 24 0.0044 0.2 12.6 0.5 1 23 975 999 975 999 0.91 16 24 0.0012 0.055 14.3 2.8 1 23 1036 1059 1036 1059 0.97 17 24 8.9 4e+02 2.2 0.4 1 21 1065 1087 1065 1091 0.89 18 24 8.2e-05 0.0037 18.0 1.4 1 23 1100 1123 1100 1123 0.95 19 24 0.00061 0.028 15.3 1.4 2 23 1132 1153 1131 1153 0.97 20 24 2.1e-06 9.4e-05 23.0 1.6 3 23 1163 1183 1161 1183 0.97 21 24 0.012 0.52 11.3 5.4 1 23 1189 1211 1189 1211 0.96 22 24 9e-05 0.0041 17.9 4.5 3 23 1219 1239 1217 1239 0.96 23 24 8.3e-05 0.0037 18.0 3.7 1 23 1245 1267 1245 1267 0.99 24 24 0.088 4 8.5 1.2 1 23 1272 1295 1272 1295 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTCGAAATACAAGTTCCCTGTAGGACTTGCCTCCAAGAAGGAGAGCAGATGAAGGATTTGTTTTCAGAGACTCATGTCCCAAGGCTTGATATGATGCTACTGTCAAGTACTCAACTAGAGGTAAATCCTCTGGATGGCCTCCCAAGTTTTATTTGTATCAACTGCACTGAAAGGTTGTACAACTCCTACATGTTTAAGAAGATGTGTTACCAGTCAGATGCTATCTTGAAGAAACACTCTGAGAAAGCCTTCGAGGAGCACAACAACGAAGCAGAGGTAAAACACAACAGGAATATAAATTGTATCATCACAAATAACTTCACTGAAGTGCCCATCATTGATATTCCCGAAGAGATTAAAGTAGAACCCCCTGAATTACAAGATGTATTAGATCTGGAAATAGACGCTCTACAAGATGATTATGGAAATGAAGAACCTCTTCACGACGATTGTGGAAATGAAGAACCTCTGTACGATGATTGTAGAAGTGAAGAACATAGTGAGAATACCGAAGAAAGCAGTACAGAAGCCTCATCGAGTCAAATTGTTACGGAACCACCGGTAAAGACAATCAGAAGAAAGAAGAGATATGAATGCTCCAAATGTAATGCAATGTTTAAAAATTCCATACTATATCAGAATCATTCCTGTAAAGATGTTGGATTCCTATGTACTGAGTGTAATAAGAGTTATACTTCATTAGCAAGACTAGAACGGCACCAACGATTTGTACATGATAAAGACTCAAATGATTCATCAGATCTTCCACCTCTTCAGTCTGGATTTCTGCAAATTAAGTATGAACTAGAGTCAAGTCAAATGCCAAATATTAAACTTAAGACTCAGGATAAGGAATATAAGGATGAAAGGGAAAATCTGAATCCAAATGAAGAAAATGATCAAGTGAAGGATAGAAAGCCATGTCCCCCTGGACCAAGTAATGAAGTGAAAGGTACAGTGAGTAAGAAGAGAAGTCGACCGATGAATAAAAAAAGCATTCCAAAGGAAGAACAATTACCTTGCGAACATTGTGGCCggTGCAGGAAATCGTTCCCAACACAAGAGGCATTGGACCACCACAAGGCGAATGATCCTCATATTACAGAACGtatcaattataataaatacttcTGTGATTACTGTGAAGAAGGTTTCACAGCTAAATATCTTTTGAAGAGACACATAATAAACTTACATATGGAGCCCAAGATAATTAAGTGTGACAAATGTGAAATGATCTTTAAGACTCGCCGTGCGAAGTACAGTCACGCCAGAGTGCATCTCCCACAGAAGAGGTGCTTGTGTCCCGAGTGTGGGAAAGAATTTAAGAAGCCCGACGCCCTGGACGTCCACATGGCTCGACACAGAGGAGACAAGAAACACAAGTGTCAGTACTGCGAGAAGAGCTTCATCAGAAGGGCTGACAAGACCGTGCATGAGAAACATCACACAAACACCAAGGACTTCTTCTGTACCGAGTGTGGAAGAGGTTTTGTTCGTTCCTGTATATTAAGAAGACACATGCTAACGCACTCGGGAGTCAAGCCTTATCAATGCACTTACTGTGACTGGAGATGCTCTCAAACAAATGACCTCAAAGCACACATCAGGCGCCACACTGGGGAGAGATTTGTCTGTGAAATATGCGCTAAAGATTTCCTTCAAGGCTACCAACTGAAGAATCATAAACTGTCTGCACATGGAATCTTAGAACCTAAAAACTGCTCCCGTGTAGAAAAAGTTGCTCCACCTATGAAAATGTCCGTTGATAATCCTGAACCCTGTAGGACCTGTCTTACAGAAGGGGGGCAGATGAAAGATTTGTTTTCAGAGACTCATGTCCCAAGGCTTGACATGATGCTAATGTCCAGTACTCAACTAGAGGTATATCCAGTGTATGGGCTCCCTCGAGTTATTTGTGTCAGCTGCTCTGATAAGTTATACAATTCCTACATGTTTAAGAAGATGTGTTACGAATCGGAGGCTATTTTAAAGAAGCGCTCTACAGTTAATGTCTCCAAAGAACAGAGAAAAGCATCAGTGGAGGAGCACAACAGTAGTAGTAATTGCGTCACAACAAATAATTTCACTGAAGCGCCTGTGATTGATATTCCTGATGTGATTAAAGCAGAACCCTCTGAATTAGAAACATCAGGTCTGGATATAGACGCATTACAGGATTATTTTGGAAATGGAGAATGTGGTGCGGATAGTGATGAGAGCAACAGAGATGCCTCCTTGAAGGAAATCATTGTGAATTTGCCTGTAAGAGCAAGCAGGAAGAAAAAGAAATATGAATGCTCCAAATGCAGTGGAAAATTTAAAAAtCGAGTACAATATCAGAATCACTACTGTAGCGATGTTAGGTTCACATGCACTGAGTGTAATAAGAGTTATGCCTCACAAGTGAAACTGGAACGACACACTAAACTGGCACATGATAAAGATTTGAATGATTCGTCAGATCTTACATCTATTGTATCCGGATTATTGGAACTCAAATATACAACAGAGAAGGATCAGATTTTGAATTTGAAAGAAGAGATTCTGATGGATGAATGTGAAATAGAAGGGGAATTGCCAAGTTCAAAAGAAGACAATGATAATAAGCCATGTTCTCCTGGACCAAGTATTGAAGTGAGTGAGAAGAAAGATTCAGCAAAGGAAAGTAATACACCGAAAAAAAAGAAAGGTCCATTATTTACAGGAGTACAGAACACAAAAGATGGAACATTCACTTGTAAATATTGTGTCTGggaaaCCACCAGAAATGAGTTGACTTTATTAAATCATATTGCTAGAGAACATGGTGTGGGGCAAAAGATGTTTGGCTGCAACAAGTGTGGTCAAATGTTCACTAGTAAAAGTAAATGCGCTAGACACAGAGCCAGGGAACATAAAAAGCCAATGAAATTTTATCCATGCCCTCACTGTGGAAAGAAAATCACCACTAGTGaggtaaatttaataaatcacATGTTCAGAGAACATGGTATAGGGCAAAGGATGTTTGGCTGCAAAGCTTGCGGTCAAATGTTCCCTAGTAAAACTAAATGCAAAAGTCACAGAGTCAAGGAGCATAGAGATCCAAACAAGTTTTATATATGTCATCACTGTGGAAGGAAATTTTACCTtCGAGCATCAATTGAGAGGCATCTGAAAATAGTACACGCTCCAAAGAATGGCTTCAAGTGTCGGAATAAGCGCTGTGCACATGTGCTCCCAACAAAGGAGGAGCTGGACCAACACATGTTGGAGGGGATTCATTCGGAATCCATGAGGTTCACCAGATACTTCTGCGACTATTGTAACAAAGGATTTAATCGTATGAATACTTTGAGAAGGCACATACTAAATGTACACATGGAAACTTTATCTGATTGTATCAAATGTAATGACTGTAAAATGAGTTTTAACACTCGCTACGGCATGagattacattataaaatacatattactgatAAATCTAAAGCGTGCCTGTGTACTGAGTGTGGGAAGGGATTTTCATCGTCTAGCGCTCTCAGGATTCACATGAATCGGCACAAAGGAGTGAAGAGTCACAAGTGCCAATACTGCGATAAAACTTTTGTAAGAGACTCTGACAGACAAGTGCACGAGAAACATCACACCAACACATATGCACACTTGTGTACTACATGCGGGAAAGGTTTTGTTCGTCGTTGTAGCTTAACTGTCCACATGCGTTCACACACGGGTGACAAGCCTTTTAAATGCACTTTCTGTGACTGGAAGTGCTCTCAAGCAAATGACCTCAAGACACACATCAGGCGTCACACTGGAGAAAGaTTTACTTGTGACTTGTGCAGTAAAGATTTTCTTCAAGTTTACCAATTGAAGAATCATAAATTATCTGAGCACGGAGTCTTAGATCCTAAAATTACAACCCGTGTAAAGAAAGTGAAAGAAACTCCACCAAAAGTAAGTAGAAACTCGCAGGGTACATAA
- Protein Sequence
- MSVEIQVPCRTCLQEGEQMKDLFSETHVPRLDMMLLSSTQLEVNPLDGLPSFICINCTERLYNSYMFKKMCYQSDAILKKHSEKAFEEHNNEAEVKHNRNINCIITNNFTEVPIIDIPEEIKVEPPELQDVLDLEIDALQDDYGNEEPLHDDCGNEEPLYDDCRSEEHSENTEESSTEASSSQIVTEPPVKTIRRKKRYECSKCNAMFKNSILYQNHSCKDVGFLCTECNKSYTSLARLERHQRFVHDKDSNDSSDLPPLQSGFLQIKYELESSQMPNIKLKTQDKEYKDERENLNPNEENDQVKDRKPCPPGPSNEVKGTVSKKRSRPMNKKSIPKEEQLPCEHCGRCRKSFPTQEALDHHKANDPHITERINYNKYFCDYCEEGFTAKYLLKRHIINLHMEPKIIKCDKCEMIFKTRRAKYSHARVHLPQKRCLCPECGKEFKKPDALDVHMARHRGDKKHKCQYCEKSFIRRADKTVHEKHHTNTKDFFCTECGRGFVRSCILRRHMLTHSGVKPYQCTYCDWRCSQTNDLKAHIRRHTGERFVCEICAKDFLQGYQLKNHKLSAHGILEPKNCSRVEKVAPPMKMSVDNPEPCRTCLTEGGQMKDLFSETHVPRLDMMLMSSTQLEVYPVYGLPRVICVSCSDKLYNSYMFKKMCYESEAILKKRSTVNVSKEQRKASVEEHNSSSNCVTTNNFTEAPVIDIPDVIKAEPSELETSGLDIDALQDYFGNGECGADSDESNRDASLKEIIVNLPVRASRKKKKYECSKCSGKFKNRVQYQNHYCSDVRFTCTECNKSYASQVKLERHTKLAHDKDLNDSSDLTSIVSGLLELKYTTEKDQILNLKEEILMDECEIEGELPSSKEDNDNKPCSPGPSIEVSEKKDSAKESNTPKKKKGPLFTGVQNTKDGTFTCKYCVWETTRNELTLLNHIAREHGVGQKMFGCNKCGQMFTSKSKCARHRAREHKKPMKFYPCPHCGKKITTSEVNLINHMFREHGIGQRMFGCKACGQMFPSKTKCKSHRVKEHRDPNKFYICHHCGRKFYLRASIERHLKIVHAPKNGFKCRNKRCAHVLPTKEELDQHMLEGIHSESMRFTRYFCDYCNKGFNRMNTLRRHILNVHMETLSDCIKCNDCKMSFNTRYGMRLHYKIHITDKSKACLCTECGKGFSSSSALRIHMNRHKGVKSHKCQYCDKTFVRDSDRQVHEKHHTNTYAHLCTTCGKGFVRRCSLTVHMRSHTGDKPFKCTFCDWKCSQANDLKTHIRRHTGERFTCDLCSKDFLQVYQLKNHKLSEHGVLDPKITTRVKKVKETPPKVSRNSQGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -