Basic Information

Insect: Ceraclea dissimilis
Gene Symbol: -
Assembly: GCA_963576895.1
Location: OY756368.1:777097-786842[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.2e-05 0.00056 20.6 2.4 1 23 161 183 161 183 0.98

2 13 0.00014 0.0063 17.3 10.5 1 23 188 211 188 211 0.96

3 13 0.072 3.2 8.8 0.1 1 23 231 254 231 254 0.95

4 13 0.0061 0.27 12.1 3.9 1 23 332 354 332 354 0.97

5 13 2.2e-06 9.8e-05 23.0 2.0 1 23 365 387 365 387 0.98

6 13 8.3e-06 0.00038 21.2 1.7 2 23 394 415 393 415 0.97

7 13 1.9e-05 0.00087 20.0 2.9 1 23 421 443 421 443 0.98

8 13 3.4e-07 1.5e-05 25.5 0.8 1 23 449 471 449 471 0.95

9 13 0.0012 0.055 14.3 0.2 3 23 479 499 477 499 0.98

10 13 1.3e-05 0.00057 20.6 0.5 1 23 505 527 505 527 0.98

11 13 0.00026 0.012 16.5 0.3 1 23 533 555 533 555 0.98

12 13 1.2e-06 5.4e-05 23.8 1.4 1 23 561 583 561 583 0.98

13 13 5.8e-06 0.00026 21.6 0.3 1 23 589 611 589 612 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.2e-05	0.00056	20.6	2.4	1	23	161	183	161	183	0.98
2	13	0.00014	0.0063	17.3	10.5	1	23	188	211	188	211	0.96
3	13	0.072	3.2	8.8	0.1	1	23	231	254	231	254	0.95
4	13	0.0061	0.27	12.1	3.9	1	23	332	354	332	354	0.97
5	13	2.2e-06	9.8e-05	23.0	2.0	1	23	365	387	365	387	0.98
6	13	8.3e-06	0.00038	21.2	1.7	2	23	394	415	393	415	0.97
7	13	1.9e-05	0.00087	20.0	2.9	1	23	421	443	421	443	0.98
8	13	3.4e-07	1.5e-05	25.5	0.8	1	23	449	471	449	471	0.95
9	13	0.0012	0.055	14.3	0.2	3	23	479	499	477	499	0.98
10	13	1.3e-05	0.00057	20.6	0.5	1	23	505	527	505	527	0.98
11	13	0.00026	0.012	16.5	0.3	1	23	533	555	533	555	0.98
12	13	1.2e-06	5.4e-05	23.8	1.4	1	23	561	583	561	583	0.98
13	13	5.8e-06	0.00026	21.6	0.3	1	23	589	611	589	612	0.96

Sequence Information

Coding Sequence: ATGGATTACGATAAGATTTGCCGCGCCTGTATGGGCGAAAGTAGAAAAATGCACGATTTATTTGCGGAAACTAAAGCGTCGATGGGCAGGAAATTGTGTGACTCCATCATGTCGATTACAGCTGTCAAAattgCGGAGAACGATGGATTCCCCACTCAACTGTGCAACAAGTGTGTCCACATATTAGATTCCGCGATCAATTTCAAGAAACAGTGCGAAGAATCTGACGCTTTGTTCCACAAAGCCGTCAGTAATGACGGCGAGAAAGTAAATGACGAATCGGAGAACGCCGTGAGTGGCGGTGTTAATATAAAACAAGAGACCACCATAGACTTCCTGGCAGTGAGTGACGACTATGGAAACGATTATGACGATGCGAGTTTTATTGAATACAAGCCGGAGGTCGACATCATGGAAGAGAAACCCATTATAGACGAAGATACTAAGTCTATTAAGAAGTCTGTTAAGACTCCCAAGGTTTACCCGTGCACTATCTGCCGCAAGTGTTACACGGGCTCCAAGTCTCTGAAGAGGCACATGATCATCCACAAGGGAGGGGGGCACTGTTGCAACCAGTGTGATAAAGTCTTCTGCAGGAGAGACCACTTGCGGAGACACTTGCAACGAATACACAATGTGGAGGATGTGGAGACTGTGATGAATGCGATAGCtgtaaagAGTGTTGTGAAATATGATTGTGAATATTGTGGCGTGGACGCTCCCAATAAAGTAGCCATGGCCAAGCACCTGCGCGCCTGTCACAAGGACAAGCTGCCCAAGCGCAAGAACAGCTTCTCAGACATCTTCAAGGATTCAGGCAGCGAGGGGGAGGGGGAAGGGGACGAGGAGACAAAAGAGGAGGAAGAGCCGGAGGAAATTGACGACAGGAAGACGATTGGTTCCGTGACGACGAGTACAGGTGGCGCCACGGCAACAATCAAGGAACAGAAGCAGGAGAACAATGACGGAGTGGATCTGGTGTTGGAGGTGCAATATTGTTGTGTCACGTGCGGCATTAAGTACAACAACCAGCACTCGTACGCGGCGCACATGACCAAACACTCAGGGCCAGTACCCAAAGGACAAACTGAATTCAAATGTACTATGTGTGACAAGGTGTTCAACAAACGCAAGAATCTGAAGCAACATGTTCTAATTCACAACAAGGAAAAGGCTAATAAATGTACTCTCTGTcacagagcCTTCACTAGACCTGACCAACTAATTTTACATATGAACAATCACACTGGCAAGAAGAGACACCAGTGTACATTCTGTGATAAAGGTTTCAACATGCTGTCCACCCTGAAGGATCACATTCGCACTCACAGTGGGGAGAAGCCGTTTCTTTGTCCCACTTGTGGAAAAGGTTTTACTCAGAACACTAACCTGAAGCAGCACATAATGCGACACAACGCCACTAAACCGTTTGGATGCCCCATGTGTCAGTCCAAGTTCGTGTCCAAGGGCGAGCTGGACGCGCATCTCCGGAAGCACACTGGGGATCATCCGTTTGTGTGCGACACCTGCGGTTCCGGATTCACCACTTCCAGTTCGCTGGTTAAGCACAAGCGCATACACACAGGAGAGCGCCCGTACGCCTGTGATTTGTGTCCTTTGAGATTCACGGCGCTCGGGACCTTAAAGAATCACAGACGAACTCACACAGGCGAAAAGCCATTTGCTTGTACTCACTGTACTAGAGCATTTGCTCAGAAGAGTGATTTGGTATCTCACATTAGGACGCACACGGGGGAGCGACCATACGTTTGTACCGTGTGTGGGACTCCCTACCAGCAGTCTTCTGCCCTGAAGGCCCACATCAAAGTGCACCATCCAATGTtGGCCCTGGAACCAAAGATACACAACACCAACGCCAATACGACAATAAATTCTCTCATTCAAGCGCAGTTAAATGCAACTACCAACATAAACACACCGCAGATTAATCAGACACAACTGGACTCACCGATGTCTGCAGCAAACCAAATTAGGATCTCGTCCCACAATGCAATCATCACTTCTTCCAGTCAGATGCTCAGCAATACCTCGGTGAATGATCAGCAAGAGTTGGCCACGTTTAAAATATCAAGTCCGGAACATTCGCAGAGTCCGCACTATTCAGGCGACAGTGTGTGA
Protein Sequence: MDYDKICRACMGESRKMHDLFAETKASMGRKLCDSIMSITAVKIAENDGFPTQLCNKCVHILDSAINFKKQCEESDALFHKAVSNDGEKVNDESENAVSGGVNIKQETTIDFLAVSDDYGNDYDDASFIEYKPEVDIMEEKPIIDEDTKSIKKSVKTPKVYPCTICRKCYTGSKSLKRHMIIHKGGGHCCNQCDKVFCRRDHLRRHLQRIHNVEDVETVMNAIAVKSVVKYDCEYCGVDAPNKVAMAKHLRACHKDKLPKRKNSFSDIFKDSGSEGEGEGDEETKEEEEPEEIDDRKTIGSVTTSTGGATATIKEQKQENNDGVDLVLEVQYCCVTCGIKYNNQHSYAAHMTKHSGPVPKGQTEFKCTMCDKVFNKRKNLKQHVLIHNKEKANKCTLCHRAFTRPDQLILHMNNHTGKKRHQCTFCDKGFNMLSTLKDHIRTHSGEKPFLCPTCGKGFTQNTNLKQHIMRHNATKPFGCPMCQSKFVSKGELDAHLRKHTGDHPFVCDTCGSGFTTSSSLVKHKRIHTGERPYACDLCPLRFTALGTLKNHRRTHTGEKPFACTHCTRAFAQKSDLVSHIRTHTGERPYVCTVCGTPYQQSSALKAHIKVHHPMLALEPKIHNTNANTTINSLIQAQLNATTNINTPQINQTQLDSPMSAANQIRISSHNAIITSSSQMLSNTSVNDQQELATFKISSPEHSQSPHYSGDSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00179660;
90% Identity: -
80% Identity: -