Cdis019951.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ceraclea dissimilis
Gene Symbol
-
Assembly
GCA_963576895.1
Location
OY756379.1:3888503-3899196[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 9.4e-05 0.0042 17.8 5.7 1 23 233 255 233 255 0.97
2 13 1.1e-06 5e-05 23.9 0.2 3 23 269 289 268 289 0.98
3 13 0.0079 0.36 11.8 3.3 2 23 298 319 298 319 0.98
4 13 1.3e-05 0.0006 20.5 0.4 1 23 325 347 325 347 0.97
5 13 0.00049 0.022 15.6 1.4 3 23 355 375 353 375 0.91
6 13 1.5e-05 0.00068 20.3 5.7 2 23 382 403 381 403 0.96
7 13 7.8e-05 0.0035 18.1 1.4 1 23 409 431 409 431 0.97
8 13 4e-06 0.00018 22.2 0.8 1 23 437 459 437 459 0.98
9 13 1.1e-05 0.0005 20.8 1.0 1 23 465 487 465 487 0.98
10 13 0.0015 0.067 14.1 2.2 1 23 493 515 493 515 0.98
11 13 3.2e-05 0.0014 19.3 1.8 1 23 521 543 521 543 0.97
12 13 6.7e-06 0.0003 21.5 0.5 1 23 549 571 549 571 0.99
13 13 2.9e-06 0.00013 22.6 0.8 1 23 617 639 617 639 0.98

Sequence Information

Coding Sequence
ATGGCTGCAACCGTGGAATTACAGCTCGACAAGATTTGTCGGGCATGTTTGCAAGTTAAAAAGGACATGAGACCATTATTTAATGAACTTGTAGCCGAAATGTTGATGTCTTGCGCCTCAGTACAgTTAGGCACAGCAGACGGCCTCCCCACGCAGCTTTGCATCCAGTGCGTGCATCAAGTGTCACGGTGTTACGCCTTCAAGCAGCAGGTGGAGCGCTCAGATCTCCGACTCAGGGAATATGTCAAGCAACATCCTCTCAAGAGTCTAGCAGCCAAGCGGGAGAACATGAATGACGTTGTTACGGTGAATCAGAATGAGCCGTATCAATTCATAGACCCTTCAGACGTGTGTGACAGCTCCATGAACAACACCAGTGTGGGTGTAGGTGTGGGTGATGGCTCACTTCTCAATAGCAACACTGGGGGAACCACAGTGCACGCCATCAGTAGTGATGGGACCACACTGGAGACGTATTACATCACTAACACTACGCAGAATGCAGACGGGAGCACTGTCTTACATATGCAGGATGTACCAATGAAAGTAGAGGACTCATTGAAAGGTGGCGACATTAAGACAGACGACGGTGCCATGGAGATGGTGGGGGAAGAGAACGACAATGATGTGGATGAAGAAGAGAGATATCTGGAGTTGGCCAGCTTCCAAGCCTCGGCGTCCATCGCACCCGGCAGACATATATGCAACTTGTGTCACAAGGAATTCAAATACGCCAAGATGCTCAAGACACATATGAGATCACATTCCAATTGGATTAAAGCAAATTGTAAGAAGCCTCCGATGTGTCCAATTTGCGGGCGCTCTTTCAAGGGACCCGGGATGCTTCGGCTGCACATGAAGACACACGAGGAGCGACCACAGCGAGCCCCGACCTGCACCATCTGTCAGAGACAGTTTAAAACTAAAACCATTCTCTACAGACACAGGCAGACGCACtttgaacAAAAGACGCATCCTTGTACCGTTTGTGAGAAGAGCTTCATCAGCAACTATGCCTTGCAGGCGCACTTGGCCAGACATCGGGGGGAGAAGACACATGCTTGTATTACGTGTGGCAAGACATTCTATAATACTACTGATCTCAAGGTTCACATACGCCTTCACACCGGAGAGAAGCCACTGTCTTGCGTGGACTGTGGCAAGACATTCAGGAGACACTCGACTCTCTGCCAGCACATTAAGAAGCACCGAGGTATCAGAGATCACGTCTGTCAGGTCTGCAAGAAGGGATTCTACGAGATGTCTAAACTCACCGCACATATGAGAGTTCACAcggGAGAGAAGCCATTTGAGTGCCAGTACTGCTCCCGCAGCTTTGCCCAGCAGTCGGCTTTGATTTATCATGAACGGACGCACACGGGAGAGAAGCCCTTCCCTTGTAAAATATGTGGCACGAGATTCACCTCAACGTCGGCCAGGAATAATCACATGCAGACTCACACTGGAATCAAAAAGTTCTCGTGCAGTGTGTGCAGCAAGGGATGTGGCAATCGTACGGAGCTCCGCATCCACATGACCAAACACACGGGGGAGAAGTTGTTCCCGTGCTCCGAGTGCAACCAGAGATTCTCCACGGCCTCCTACTTGGCTGTGCACAAGCGGCACCACACGGGAGAGAAGAAATATGTCTGTCCTACTTGTAATAAAGGTTATGTGGAATCGGGTTCGTTCAAAAAACATATTCGTACTCACACCAAGGAAGAAATAGACGCAGCGGAGCAGCAACAGAATGAAGGGGCAAGCAATGACGGGAGCAACAGTAACAATGACTCGGGAGACCAACAGACTGATGGTAATGCCCCTCCACAACATTTGCCCACTAAGACCTATGCATGTTCGCTGTGCCCCAAGTCTTACACGCAGGGACAAAACCTCAAGAAACACATGATGACACATGGCGTTCTCAACACGCCTACTCTAGCAGTAGTGACGACTAACCAGCAACAACAGCAGCAGCAACAACAACAGCAACAAGTGACTGTTGTTGCTCAGTCACAACAGAATCAGCAAGTGATACAACAACAGGTGATACAACAGCAGGTCATGCAACAACCTCAGCAACAGTTGCAGGTGCAGGCTATACAGATACATCCACAACATGTCACTGCACAACCCATACAGATACATGCTGTGGGAGTTCATCAGGTGCAACAACAGCAAGTCCATGTCGCCGCATCAGCTTGCCAACCTGTCCAGATACCCAACATTGTACAGGTACAACCGGCACATGTGGCGGTGGCAGGGCTGCAGCAGCATGAGTTGTCTGCCGTGTCTGTGGGGAACATTGCACATCGCATTATACTGCAACCATCACACTCCATGTACTTACATCACTAG
Protein Sequence
MAATVELQLDKICRACLQVKKDMRPLFNELVAEMLMSCASVQLGTADGLPTQLCIQCVHQVSRCYAFKQQVERSDLRLREYVKQHPLKSLAAKRENMNDVVTVNQNEPYQFIDPSDVCDSSMNNTSVGVGVGDGSLLNSNTGGTTVHAISSDGTTLETYYITNTTQNADGSTVLHMQDVPMKVEDSLKGGDIKTDDGAMEMVGEENDNDVDEEERYLELASFQASASIAPGRHICNLCHKEFKYAKMLKTHMRSHSNWIKANCKKPPMCPICGRSFKGPGMLRLHMKTHEERPQRAPTCTICQRQFKTKTILYRHRQTHFEQKTHPCTVCEKSFISNYALQAHLARHRGEKTHACITCGKTFYNTTDLKVHIRLHTGEKPLSCVDCGKTFRRHSTLCQHIKKHRGIRDHVCQVCKKGFYEMSKLTAHMRVHTGEKPFECQYCSRSFAQQSALIYHERTHTGEKPFPCKICGTRFTSTSARNNHMQTHTGIKKFSCSVCSKGCGNRTELRIHMTKHTGEKLFPCSECNQRFSTASYLAVHKRHHTGEKKYVCPTCNKGYVESGSFKKHIRTHTKEEIDAAEQQQNEGASNDGSNSNNDSGDQQTDGNAPPQHLPTKTYACSLCPKSYTQGQNLKKHMMTHGVLNTPTLAVVTTNQQQQQQQQQQQQVTVVAQSQQNQQVIQQQVIQQQVMQQPQQQLQVQAIQIHPQHVTAQPIQIHAVGVHQVQQQQVHVAASACQPVQIPNIVQVQPAHVAVAGLQQHELSAVSVGNIAHRIILQPSHSMYLHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-