Cdis014346.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756372.1:5844989-5848842[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3e-05 0.001 19.8 3.5 1 23 157 179 157 179 0.98 2 13 2.5e-06 0.00011 22.8 0.9 1 23 188 210 188 210 0.96 3 13 0.0069 0.31 12.0 1.4 5 23 221 239 218 239 0.94 4 13 2.2e-06 9.7e-05 23.0 3.1 1 23 271 293 271 293 0.98 5 13 1.1e-07 5.1e-06 27.0 2.5 3 23 302 322 300 322 0.97 6 13 0.00012 0.0056 17.5 1.0 1 23 328 350 328 350 0.99 7 13 1e-06 4.6e-05 24.0 0.5 1 23 356 378 356 378 0.98 8 13 7.8e-06 0.00035 21.2 1.3 1 23 384 406 384 406 0.96 9 13 0.00025 0.011 16.5 0.4 1 23 412 434 412 434 0.98 10 13 0.0012 0.056 14.3 0.4 1 23 440 462 440 462 0.97 11 13 7.4e-05 0.0033 18.2 4.1 1 23 468 490 468 490 0.98 12 13 5.7e-06 0.00026 21.7 1.5 1 23 496 518 496 518 0.99 13 13 0.00021 0.0094 16.7 1.8 1 23 524 546 524 546 0.98
Sequence Information
- Coding Sequence
- ATGGAAATTGTTGAAAGCAAAGAAAAATCTCTACCCAGTCCTACTGAATATTGCAGGACGTGCATGGAGCATAACAACTCTGCGTCTTCTTGCTTTACGAGCCTCTTCAATGTTCCTCTTTTGGCAGAAATGTTGACTAGTTGTGCCTCTGTACAGGTTCATATTGATGATGGCCTACCAGAGCAAGTATGCACTACGTGTTTAGAAACCTTAACAACAGCTTATGAATTTAAGAAGAAATGTGAACGTTCTGATGAAGAACTCAGAAAAGTATTTCTCTTCAATGTAACGACGTCGGAGACtttcaatttgaaaataaaacaagagCCAATAGAAGTGAAAACTGAATATTTCTATGACAACAACAACGTATGTAATGATGATGACTTCAGAGATTCAGACGATGAACCACTGGGATCAATCGaaattaaagtaaaaaagaaacgtAAAAGATTACCCAAAACGATACACCAATGTCATGTCTGTCAAAAAGTCTTTCCTAAAAATAGCAAATTATTAAGACACGTACAAATACACGATAAGGAAGTTAATAATAAAGAACACGCTTGTACAATATGTCAACGTGTTTTCGATCGTGCTTCTAAATTAGAAAGAcacattaaaatacataatccAGAATTGAAGCCACACGGTTGTATTCATTGTGAGAAACGATTTAAAAGTGAAAGTTTATTGTTGACACATTTAGTTACACATCAGACTCCTTCCAATGGTGGGAATGTCGAGGAGGGTAGTGGAGTGGAGGAAGGAATGAAACAAGAACAAGATTTGCAAATCAAAGCTGAGAAATATCCTTGTGAACAATGTGATAAATTCTTCTATACGTCTCACTCATTGTCAGCACACATGAGAAAACACAGAGTTAAGAATAGAATACTTGCATGCTCCATATGTGGGAAGGTATTCAAGAAGTCTAGCCATTTGAAGAGACACGAGAGAACCCACGAAGACAATCGCCCCTTCAAATGTACTCAGTGCACCAAGTCATTTGCCCTAGAGAGACAACTAGTGGAGCACATCAATAAACATAAAGGAGTTAAACCTCATCAGTGCCCAGTGTGTAGTAAAGCATTTGCTCAAACCTCGACTTTGAACGCTCACCTCCGAGTGCACACTCGTGAGAAACCCTACTTGTGTGCTACGTGCGGAAAGAGATTTGACAGCAGTACAAACTTGAATCAACATCTCAAGAGACATCGGGGAGAGAAAACATTTTATTGCACACTCTGTCCCGGCAGATATGTTAGTAAAGGTGAACTACAATCACACATGTCAACTCACACTGGGGCTCGACCATTTGTCTGCGACACGTGCGGATCGGCATTCACGAAAACTAATTCCTTAGCCAAGCATAAGCTCATCCATCTGGGCATTAAACCACATGAATGTGACGTTTGTGCTATGAGatttaaCAGCAAAGATCACCTCAAGAGACATTATAGAATTCACACGGGCGAAAAACCTTACAAATGTGAATTTTGTGAACGGGCCTTTACTCAGAGTAATGACCTTGTGAAACATACGAGATCACATCTGGGAGATAAGATGTATAGGTGTTCATTCTGCTCCGAGAGCTTCCGCTTGAAAACAGAACTACGCAAACACGTCTCTATACACTTTACCAAATCACAGACAGGTACCTCGTCTGAAACACAACAAAGTGCTTCCAATAGCGGTGGCAGAACTGTAAAGAAATCTTTAATAACTCCCTCATCAGAAATGCTGGGCGAAAGTAGTAACAGTTTCACAGATAATGTGTCTTTACACTTTGCAGACAATAAACAAACTATATTAGACGGACACAGTGATATCCAAGCAAGTccaaataaaagaataaaagtAGAGAGCATAGATTATGCTCAAGCAACGTCTGTGGCAgaaaatgcaacaaaaattGATTCGTAA
- Protein Sequence
- MEIVESKEKSLPSPTEYCRTCMEHNNSASSCFTSLFNVPLLAEMLTSCASVQVHIDDGLPEQVCTTCLETLTTAYEFKKKCERSDEELRKVFLFNVTTSETFNLKIKQEPIEVKTEYFYDNNNVCNDDDFRDSDDEPLGSIEIKVKKKRKRLPKTIHQCHVCQKVFPKNSKLLRHVQIHDKEVNNKEHACTICQRVFDRASKLERHIKIHNPELKPHGCIHCEKRFKSESLLLTHLVTHQTPSNGGNVEEGSGVEEGMKQEQDLQIKAEKYPCEQCDKFFYTSHSLSAHMRKHRVKNRILACSICGKVFKKSSHLKRHERTHEDNRPFKCTQCTKSFALERQLVEHINKHKGVKPHQCPVCSKAFAQTSTLNAHLRVHTREKPYLCATCGKRFDSSTNLNQHLKRHRGEKTFYCTLCPGRYVSKGELQSHMSTHTGARPFVCDTCGSAFTKTNSLAKHKLIHLGIKPHECDVCAMRFNSKDHLKRHYRIHTGEKPYKCEFCERAFTQSNDLVKHTRSHLGDKMYRCSFCSESFRLKTELRKHVSIHFTKSQTGTSSETQQSASNSGGRTVKKSLITPSSEMLGESSNSFTDNVSLHFADNKQTILDGHSDIQASPNKRIKVESIDYAQATSVAENATKIDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -