Cdis008304.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- Znf296
- Assembly
- GCA_963576895.1
- Location
- OY756365.1:8451800-8457596[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.23 10 7.2 0.8 2 21 171 190 170 191 0.90 2 15 0.0034 0.15 12.9 0.2 2 21 198 217 197 220 0.89 3 15 2.6e-05 0.0012 19.6 1.6 1 23 247 270 247 270 0.95 4 15 0.01 0.47 11.4 4.2 2 23 343 364 343 364 0.97 5 15 0.0003 0.013 16.3 4.3 3 23 372 392 371 392 0.99 6 15 3.2e-05 0.0014 19.3 1.3 2 23 489 510 489 510 0.95 7 15 1.5 68 4.6 1.7 1 21 517 537 517 538 0.91 8 15 0.00019 0.0087 16.9 0.4 1 23 547 570 547 570 0.96 9 15 2e-05 0.00088 20.0 4.4 1 23 591 613 591 613 0.97 10 15 1e-07 4.6e-06 27.2 1.6 1 23 620 642 620 642 0.98 11 15 2.1e-07 9.3e-06 26.2 2.0 3 23 655 675 653 675 0.96 12 15 9.4e-06 0.00042 21.0 2.5 1 23 681 703 681 703 0.99 13 15 1.8e-06 7.9e-05 23.3 2.2 3 23 711 731 709 731 0.97 14 15 2.2e-07 9.9e-06 26.1 1.6 1 23 737 759 737 759 0.99 15 15 0.017 0.79 10.7 0.0 1 23 765 789 765 789 0.93
Sequence Information
- Coding Sequence
- ATGGCGGAACAGAATGATATGTCAGAGTCGAGGATGGAAATAAATTTTGAGAGAGTCTGCCGAACGTGTTTGACTGAGTGCGATGATATGAAATCTGTATTCTGCAATGATGGCAATGTCGAGAGCTCTAATCTGAGTACCATGGTTTCATCATGTACGCGATTAAAGGTGGTAGAGGGTGATGGCCTACCCATTCACATATGTGGGAGTTGTGTGGACAGTGTAACTGTGGCGTTCACATTCAAACAGCAGGCTGAGAGGGCTGATGCCAAGTTAAGGGATTACATTGTAAGGAAGCATCCCAGCATGACGATCAAACATTCTACTAGAATCAAACAAGAGCATTATGGAAATGATATTTCAATAAAAGATGAAGTGAGTCACTTTGAAGCTTCATTTCAAGATCATTCAGATGACTCAGATGATGACTGTAGACCCCTCAAAGattttcaAACTAATAAAGATACGCTGAATCCCTCGTCCCAGGAAGGCCACCAACAAGAAAATATAACCTGTGACTGTTGTAATGAAACTTTTATGAATCAAGTTGAATTAGAGAGCCATAGAAACAAACAGAATGCTGGTTTTGTGCAATGCGAAATATGTTTTAGAGCATTTACAACTGAGCAATATTTAAGTAGGCATAAAGTAGCGGCACATTCTAAAGTTCCCTTGGTGAAAGAAGACAATAATTGTAAGAATGGTGTAATAGAAATCAGCAGTGAATCATTTCAACTATACACATGTAAGTTTTGTGATTATTCCTTTAAAAGAGAAGACCAGCTTATTACACATTTGTCTCTTTCCCACAATGATAAGTGTGGCCCTAAGAAGAGAGGGAGGCCATCAAAGAAAGACATCCTGGCTAAGAAGATACGCTTGAAAGGAATTCTTGAAACAatgaatattaaaatagaaAGTGAAGACTTACTGCCAACTGAAgttaattctatggaaaaacaaAAGATGAGTTCAAGTGTTGATGTTGAAATGCCATTGGAGGTGGGGAGATTGAATAAGGACAATTATTGTAACTTATGTTGTAAGAGCTTCTCCTCTACTGATTTGTTGGAGAAACATCTCAAGAAACATTTGGAAGGGCAATTGCTGTTATGTAAATTGTGTAATAAAAGTTTTACTAAAATGAGTCACGTGAAGAAACACATATTAACACACAACACCTTAGAGTCATTATCTCGGACGGACCTTAAGAGTAAATCAATTCTACTTGGGGATCATGAAAAAGTAACTAATATGAAATCTGAGGATTTCACCCATCAACTTCTCAACCAAATTATAATTGAAGACATCACATTAGGGAAAATAGAGCGGTACATCAATGAAACTAAAGTAGAAACTATGGATCCAGATGATACAGACAGAACTTTACTCAACACTGACAGTGATAAAGACAAGGATGGAATAGTTTTAAAacatagaaaagaaaataaaagtaaGAATAGAAAGTGTGATTTGTGTAATTTAACATTTACAAGAAGTGCACATCTCATCAGACACATGGGTGAACATAGTGACTATGAGTTTCCCTTTAAGTGTGATAAGTGCTGTAAAGTATTTCCTAATGAAGATATTTTACTGAAACACAAGAAGCTGCAGtgtgaaaatatgaataaaCCTTATGCGTGTGGTACCTGTGGAATGAAGTTCTCATATGAAATGTCTCTAAATAAACATATCCTTAGGAACCATAAAGGTGAAGCCGTGTCTGTTAACTTCATAGATCCCGCTTATCAGAAGAAGGAAAAGAAGTTTGTATGCTCTACTTGTAATAAGTCTTTCTACAGAAAAGAGCATTTGGAGAAACATTCTAAAGTACATCTGCCTAATGAGAAGAAATTTGAATGTCCAATTTGTCAAAAGAAATTCAATAGAAAAGATAATTTAAgATCCCACACTCGAGTCCACGAGCCTAACAAGGAAGATCTGGAGTCAAATTGCCTTTGTGTATATTGTGGTAGATCATTCTCCAACTCCTCTAACTTGATAGTCCACATGAGGCGCCACACAGGGGAGAAACCATACAAATGTGATATCTGTGATAAGGGTTTTCCACGTTCCTCAGACTTGCAGTGTCATCGTAGAACACACACTGGGGAGAAACCCTGTTTATGTACAATATGTGGGAAAGGTTTCTCTCGTTCTAATAAGTTGGTACGTCACATGAGAATTCACACGGGCCAGAGACCATACAAGTGTACGTATTGTGATAGAGCCTTCACACAGAGCAACGACCTCACCTTGCACATACGTAGACACACTGGGGACAAGCCTTATGTGTGTGGAGTGTGCGGAGACAGATTTATACAGGGGACGGCTCTACAAGCACATAGAAGAATGCAAGGACACTATGAGAATGGCACAACACCAGCTCCATTCTCAGCCACATCTGTAAATAATCCAAGCAGGGAGAATGCTCCTCACAGAGTAGCCAGGGTTGGACATGTGAAGACTGAGGGTGCTAATGCAAATGTTACACCAGTGACTTCTTCCACATCAAACACAACAACATCAGAACCAAATGATAGTGAAATTCGACCAGCTCAATCTCAAGCGAGGAGCAGTTCTCAAAGTTACAGTGCAAATGGAGTGGCTGCCTTCCTAACTGGTCCTGTGTTAATGCCAAACTTAGATGTTGCAAATATTTCCAATCTACCATTGTTCTCCTTGCCACAGTACAACCAAGGATATAACTAG
- Protein Sequence
- MAEQNDMSESRMEINFERVCRTCLTECDDMKSVFCNDGNVESSNLSTMVSSCTRLKVVEGDGLPIHICGSCVDSVTVAFTFKQQAERADAKLRDYIVRKHPSMTIKHSTRIKQEHYGNDISIKDEVSHFEASFQDHSDDSDDDCRPLKDFQTNKDTLNPSSQEGHQQENITCDCCNETFMNQVELESHRNKQNAGFVQCEICFRAFTTEQYLSRHKVAAHSKVPLVKEDNNCKNGVIEISSESFQLYTCKFCDYSFKREDQLITHLSLSHNDKCGPKKRGRPSKKDILAKKIRLKGILETMNIKIESEDLLPTEVNSMEKQKMSSSVDVEMPLEVGRLNKDNYCNLCCKSFSSTDLLEKHLKKHLEGQLLLCKLCNKSFTKMSHVKKHILTHNTLESLSRTDLKSKSILLGDHEKVTNMKSEDFTHQLLNQIIIEDITLGKIERYINETKVETMDPDDTDRTLLNTDSDKDKDGIVLKHRKENKSKNRKCDLCNLTFTRSAHLIRHMGEHSDYEFPFKCDKCCKVFPNEDILLKHKKLQCENMNKPYACGTCGMKFSYEMSLNKHILRNHKGEAVSVNFIDPAYQKKEKKFVCSTCNKSFYRKEHLEKHSKVHLPNEKKFECPICQKKFNRKDNLRSHTRVHEPNKEDLESNCLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDICDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGQRPYKCTYCDRAFTQSNDLTLHIRRHTGDKPYVCGVCGDRFIQGTALQAHRRMQGHYENGTTPAPFSATSVNNPSRENAPHRVARVGHVKTEGANANVTPVTSSTSNTTTSEPNDSEIRPAQSQARSSSQSYSANGVAAFLTGPVLMPNLDVANISNLPLFSLPQYNQGYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -