Cdis012009.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756369.1:10424633-10429450[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.5e-06 0.00034 21.3 2.2 2 23 318 339 317 339 0.97 2 13 7.2e-07 3.2e-05 24.5 0.3 1 23 345 367 345 367 0.98 3 13 0.00046 0.021 15.7 0.1 2 23 392 413 391 413 0.96 4 13 0.0015 0.066 14.1 6.6 3 23 422 442 421 442 0.98 5 13 0.0003 0.013 16.3 2.9 1 23 448 470 448 470 0.99 6 13 0.00042 0.019 15.8 8.9 1 23 479 501 479 501 0.98 7 13 4.9e-06 0.00022 21.9 0.1 2 23 508 529 507 529 0.96 8 13 4.3e-06 0.00019 22.1 3.6 1 23 535 557 535 557 0.97 9 13 1.5e-06 6.9e-05 23.5 0.2 1 23 563 585 563 585 0.98 10 13 2.2e-06 0.0001 22.9 0.8 1 23 591 613 591 613 0.98 11 13 0.012 0.53 11.2 3.4 1 23 619 640 619 640 0.96 12 13 6.8e-06 0.0003 21.4 1.4 1 23 646 668 646 668 0.98 13 13 2.5e-06 0.00011 22.8 2.4 1 23 674 697 674 697 0.97
Sequence Information
- Coding Sequence
- ATGTCTGAAAACCACGATATATCTGTTGGGGATGTACATGGACCTGAAAATGTACATGAACTGCATATAACTGAATCGCATTTGGACGGCATTCTTGTTGTGCAAACTATTAATCCAGATGACAGTGAAGAAATATCGGAAGAAATTGAAATAGAACTTCCTGTGGAGTTTGAAAAACTAATATCAATTGATACAAGTCAAATAGCTAAACTGTGTCGCGCTTGCCTTTGTGAGAAGCCTGACATGCATTCACTGTTTGATACTTGGGATGTTGAAACACTTGCCGAAATGTTGGCTACATTTGCCTCTGTGCAGCTTACATTTGGGGACGGTCTTCCTGAAAACTTATGTCAAGATTGCGTTGAGTTAGTGGGGAAGTGTTACGGCTTTAAACAGTTATGTGAAAGATCTGAGTCAATGCTCAGATTGTTGATGAATCAAGGACATTCGCAGTTACAAGGTTTAAAAGACAATAATACTGAAGCTGATAGTGGAACTCAACAcagAAGCGTGATAATTAAAACCGGTGATAAAAATGAACATATGCAGCAGAATGTTCAAGAGAAAACCAGTTACGTTGAAGATACAGACTATCAAGAGactttttatgataataatgaaattgaaaaGGAAGCGTGTAAAGACAAATCAAGTGTAAAACAGTCACCGAAATATATGAAAATGTCTTCCCTAAGCATTACGTCTAATCCGAGTATAACTATAGAACCATCTCTAGATGTCAATGTAGAGAAAAGTAAAAAGTCCAAATCAATTAATGGTGTTCATAAatctaagaaaaataaaattgaaaatgtagATATACAAGAATCCACCGATTGTCTGGCCTTGGATGATTTGAAAGAAGAAATTGAAATCAAATTAGAATCTGAGTATGATTCTGATCGAAGTAATGATGAGTTTAAATTGGATTTTACGGTAGAAACAACATTACAATGTTCAATATGTGGAAAGCAATTCTCTAgtCGAAAGAAATTGTCTCGTCATGAGAAAACACATCTTCCTATTAAACCATTTAAGTGCAATATTTGTGGAAGAGGTTTTAGTGAATCTGGTGATTTGAGACGTCACGAAAGAATTCACAAACGGAAAGGAGAAATAAACAATGGATTACAACTTATAGAAGAAGATAAGGCCCTTCTTGATATCAGAGTTCCGTGTACGCAGTGCCACTTAACATTTGCAAGCGAGAGTGATCTTGCTATCCACCAAGCGATACATGTAGAGTTTAATGGAAAGAAAATATGTCATCATTGTAAGAAGCAATTTGATACAACACTTCAACTGAAGCGACATGTACGAACTCACCTGTCGGACAAGCCGTACAAATGTCGCATTTGTCATAAAGGTTTCCCTGAGATGGGTTCTCTTACTCGCCACTTTCGTCGACACACGGGTGAAACGAGAGAGAAAAAACATGTCTGTAAACATTGCGATAAAGCTTACCATGATCGTCATTCCCTCAACATTCACATGAGAAAGCACACGGGTGAACGACCGTGGATTTGTTCCGAATGTGGGAAAGGATTCATTGATTCCCGATTGTTGAACTCCCACATGAAGGTACACAGTGACAATAAACCGTTTGCCTGCACAATGTGTGATAAAAGGTTCAAACATGAGTCTACGCTCACTACACATGTTCGTAcgcatactggtgaaaaaccatACATTTGTACAGTGTGTGGAAATGCTTTCGTACAATCTTCTAATTTATCTCTACACATGAGATCTCACACACGAGAGCGCCCCTACCCGTGTGACCGATGTCCCAAGAAGTTCTCCAGTTCCTCAGCCCTGACGACACACAAACgcattcacactggtgaaaaacctttctCATGTAATATTTGTCAGAAGAAATTTGCTCGTCACGACATGTCGATTCACATGCGTCGTCATACAGGCGAGAAGCCCCATGAATGTTCCGTCTGCTCCAAGAGATTCACCACTCCGGGCCAGTTGAATCTTCACACCAGAATTCATACCGGTGAAAAACCGTTTACTTGTCAAATATGTAACAAGAGCTGTGCTACAGCGAGTTACTTAAAGAAACACATGCTGAGAGCTCATAACACAACGTGTATATGGCAGTTACCTGAAGATATTATCAAGCAGGGTATTCTCGATATACCCGCTGACGACAAATTTAAAGAAGTACCAGACAAATCAATCGCTGTTtgtaaagaagaaaataatatagacaaacaacaaattaaaaatgaaatcgTTCCTGTCCAACAACAACAAACGGGTGAGAATGTTCCGAGTACATTGACTACTTATTCGAGTAATATGTTGAATGTTGTAGCAGTGGCTGCCGCCAATGGTGAAGTCAGTATTCTCAGTCAGAAGAATGATTTAAACATTTCTACGCTACGAGGTCAGGCTGGAGATAATATTAGTACAATTGTTTCTAATACTGAAGAGAAACTTTATCAAATTGATCCACCGCTGTTTAGAATACACCACATTTCGTCACTCCAAGCTGAACATATTACTATAGCAGATCTTGGGGGTGATACTAaccaacaataa
- Protein Sequence
- MSENHDISVGDVHGPENVHELHITESHLDGILVVQTINPDDSEEISEEIEIELPVEFEKLISIDTSQIAKLCRACLCEKPDMHSLFDTWDVETLAEMLATFASVQLTFGDGLPENLCQDCVELVGKCYGFKQLCERSESMLRLLMNQGHSQLQGLKDNNTEADSGTQHRSVIIKTGDKNEHMQQNVQEKTSYVEDTDYQETFYDNNEIEKEACKDKSSVKQSPKYMKMSSLSITSNPSITIEPSLDVNVEKSKKSKSINGVHKSKKNKIENVDIQESTDCLALDDLKEEIEIKLESEYDSDRSNDEFKLDFTVETTLQCSICGKQFSSRKKLSRHEKTHLPIKPFKCNICGRGFSESGDLRRHERIHKRKGEINNGLQLIEEDKALLDIRVPCTQCHLTFASESDLAIHQAIHVEFNGKKICHHCKKQFDTTLQLKRHVRTHLSDKPYKCRICHKGFPEMGSLTRHFRRHTGETREKKHVCKHCDKAYHDRHSLNIHMRKHTGERPWICSECGKGFIDSRLLNSHMKVHSDNKPFACTMCDKRFKHESTLTTHVRTHTGEKPYICTVCGNAFVQSSNLSLHMRSHTRERPYPCDRCPKKFSSSSALTTHKRIHTGEKPFSCNICQKKFARHDMSIHMRRHTGEKPHECSVCSKRFTTPGQLNLHTRIHTGEKPFTCQICNKSCATASYLKKHMLRAHNTTCIWQLPEDIIKQGILDIPADDKFKEVPDKSIAVCKEENNIDKQQIKNEIVPVQQQQTGENVPSTLTTYSSNMLNVVAVAAANGEVSILSQKNDLNISTLRGQAGDNISTIVSNTEEKLYQIDPPLFRIHHISSLQAEHITIADLGGDTNQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -