Cdis001198.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756358.1:23463664-23467034[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0036 0.16 12.8 0.7 1 22 275 296 275 296 0.96 2 17 1.4e-05 0.00065 20.4 1.0 1 23 335 357 335 357 0.97 3 17 0.00012 0.0056 17.5 2.5 1 23 363 385 363 385 0.97 4 17 2.3e-05 0.0011 19.7 4.5 1 23 391 413 391 413 0.98 5 17 8.1e-06 0.00036 21.2 0.2 1 23 419 441 419 441 0.98 6 17 0.001 0.045 14.6 0.4 1 23 450 472 450 472 0.98 7 17 6.5e-06 0.00029 21.5 1.8 1 23 479 501 479 501 0.97 8 17 0.00033 0.015 16.1 1.3 1 19 507 525 507 526 0.98 9 17 0.00014 0.0064 17.3 0.6 1 23 535 557 535 557 0.98 10 17 0.00036 0.016 16.0 1.5 5 23 566 584 563 584 0.95 11 17 8.6e-05 0.0039 18.0 0.1 1 23 590 612 590 612 0.98 12 17 7.1e-06 0.00032 21.4 0.6 1 23 618 640 618 640 0.99 13 17 8.2e-09 3.7e-07 30.6 0.2 1 23 646 668 646 668 0.98 14 17 8.7e-06 0.00039 21.1 2.6 1 23 674 696 674 696 0.98 15 17 0.008 0.36 11.8 1.1 1 23 702 724 702 724 0.98 16 17 0.12 5.6 8.0 0.2 1 23 730 752 730 752 0.93 17 17 0.048 2.2 9.3 0.7 1 23 758 780 758 780 0.97
Sequence Information
- Coding Sequence
- ATGGCTGAGCCGGGAGAGTTGCCCGTGAATTTGCTTTCTGATAATTTAGTTGATAATTCTTTCGATCTTGTAAATAGTATTACTTCTTGTGATGTAAGATATTGTAGGGCTTGCTTGGGAACTGATGATACATTTAGAATGGTACCCATATCTCCAGAATATGACTTTCTCATAGAACTGATGACAGCTTCCACCAAAATGTCGCAATGCCCCATAAGTCGTTGGCTCTGCTACAAATGTTCTCACACTATCAAAAGTCTCACAATGTTTCGCGTATTGCTCATAAAGTCTGACAGGATTCTCAGAGAATACTACAAAAAACATGGAGTTGAACAAAAGatgGACCCCACATATTTAAACCAAGAAAGAGACGCGACGTACGACAGTCAACCTTCTCTCTCCAACATTCTCTGCGTCAACGTTCAGAATCTCAACGGCGAACACAAATACATGGAGGATTACGACGTCACGACCGATTGTGTGACTTACATTCGAGAGAATTATACAACTCTGAAGAACTATGCCCACGATATGAACATCAAGAAGTTGTCTGATCTGAGCAGTGAAGATAAAACAGAAAACGATAAACGGTGTTCTAGTGGTAGTGATTTGAAAATGGAAGACATTTCGAATATTGATGAGGCATCTTTCgtagatgatgatgattatgatGAGAAATATGATAATGCGGACAATTCGTTCAATGTATTAATTGTGGGTAAGGTGGATGAGGATGATAGTAAACTGAAGATTGATCTGTGCGACAATTCTGACTTTTTGCACCAAGTTAAAGTGGAAGAATTAGaTTCAGATGCTTTCGCATACGCCTGTAAATATTGTCACAACGAATTTGCCTCGGACACGGATTTGTCGAGACACATTAAAACATGTGACGTTAGgaaaattaaaaagaagaaaaaacggCAATACGACGATGTGGATGAGAAAACATTATTGGAAATAAGATCAGAATTGAAGagtaaaaagaagaaaaaaaccaAATTCAGTTGCGATGTTTGTTTTAGAGTATTCAAAACACTCAGTCAGTTAGAAAGGCATTTAGTCAaacatacaaacaaaaaatcatttaattGTGACGTTTGTCAGAAGAACTTCAGATTCGAATCACAATTGAAAATACATCGAAAGAACCACGAAAAGAATACACAATACAGTTGTTCGACGTGCCAACGTACGTTCTCACAACTGTCTTATTTCAAAACACACCAACGTTCCCATTCTGGAGATGAAACTTTTGAATGTACCCAGTGTGATGGCGTGTTCGAAACCGCTAGCAATTTAAATTCACATATGAAAGCGCACAATAATAAGCTTTCGATAAAGATATTTTCGTGCGAACGCTGCGACGTTAAGTTTGCCGACGATAAACAACTTCAGGAACACTTGCAGAGTCATTCGTCCCAGGAGGATTCGTACAAGTGTGATATTTGCGAGAAAGTCTTCCAGCATCCTAGCTACCTGAAGCGGCACTCTTTGGTTCACTCGACAGTTAAAAATTACAAATGCGACGTATGTTCGAAGAGATTCAAACGTGAAACGGAACTGAAGTCTCACAACTGGATTCACACGGACAAGCGTCCGTTTGTCTGTGAGGAATGCGGTTTATCGTTTCAGTACGAATCTTACTTGCGTCTCCACAAGATGTCTCACACCGGGGAGAAGCCCCATATTTGTGAATGCGGCAAGGCTTTTAAGACGACTTCTAATCTCAACGCTCACAAGATAAGGCACACGGGTGTCAAGATGTTCAAATGTGAGGTGTGCGGTAAAGGTATTAAAAGTGCAGGACAATTGAAGGAGCACCTTCTGATCCATACTGGAGAACGTCCCTTCAAGTGTAGTTCGTGTCCGAAGGCGTTCAGAAGAGCCGTGACATTACGAATACACACTAGGATTCATACTGGCGAGAAACCATTCCCGTGCAAGGAATGCGGGAGACCGTTTCGAAGACAGGGAGAACTGCAAGCACACATGCGAACCCATACTGGAGAACGCCCGTACAATTGCGACATTTGCGGGAAATGTTTCGCAAGTAACGGCACATTCCTCTCTCACAAACGTACGCACAgcggtgaaaaacctttcgTGTGTCTAATATGTTGCAAAGGCTTCACTGGAGCGAGCTACCTTAAGATACACACAAAGATTCACACGGGAGAAAAGGACCACGCTTGTCCTGTCTGTCAGTACAGGTGCGTGAGTGGAGCGGCGCTCCGAGCGCACGCTGTGGTCCACTCCGGACAGAGACCGTACGCTTGTGAAGCGTGCCCCTACAGAGGCGCTACACTGAAACATCTGAGAAATCATAAACTCACTCACGAGAGGAATTCGTACACTTGA
- Protein Sequence
- MAEPGELPVNLLSDNLVDNSFDLVNSITSCDVRYCRACLGTDDTFRMVPISPEYDFLIELMTASTKMSQCPISRWLCYKCSHTIKSLTMFRVLLIKSDRILREYYKKHGVEQKMDPTYLNQERDATYDSQPSLSNILCVNVQNLNGEHKYMEDYDVTTDCVTYIRENYTTLKNYAHDMNIKKLSDLSSEDKTENDKRCSSGSDLKMEDISNIDEASFVDDDDYDEKYDNADNSFNVLIVGKVDEDDSKLKIDLCDNSDFLHQVKVEELDSDAFAYACKYCHNEFASDTDLSRHIKTCDVRKIKKKKKRQYDDVDEKTLLEIRSELKSKKKKKTKFSCDVCFRVFKTLSQLERHLVKHTNKKSFNCDVCQKNFRFESQLKIHRKNHEKNTQYSCSTCQRTFSQLSYFKTHQRSHSGDETFECTQCDGVFETASNLNSHMKAHNNKLSIKIFSCERCDVKFADDKQLQEHLQSHSSQEDSYKCDICEKVFQHPSYLKRHSLVHSTVKNYKCDVCSKRFKRETELKSHNWIHTDKRPFVCEECGLSFQYESYLRLHKMSHTGEKPHICECGKAFKTTSNLNAHKIRHTGVKMFKCEVCGKGIKSAGQLKEHLLIHTGERPFKCSSCPKAFRRAVTLRIHTRIHTGEKPFPCKECGRPFRRQGELQAHMRTHTGERPYNCDICGKCFASNGTFLSHKRTHSGEKPFVCLICCKGFTGASYLKIHTKIHTGEKDHACPVCQYRCVSGAALRAHAVVHSGQRPYACEACPYRGATLKHLRNHKLTHERNSYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -