Cdis002389.2
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756359.1:19756505-19762634[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.03 1.3 10.0 3.9 1 23 208 230 208 230 0.98 2 24 0.31 14 6.8 2.3 1 23 238 260 238 260 0.96 3 24 0.013 0.59 11.1 4.6 1 23 268 290 268 290 0.97 4 24 8.2e-05 0.0037 18.0 1.1 1 23 297 319 297 319 0.96 5 24 3.7e-05 0.0016 19.1 1.1 3 23 329 349 327 349 0.96 6 24 0.007 0.32 11.9 7.2 2 23 356 377 355 377 0.97 7 24 0.039 1.8 9.6 2.0 1 23 384 406 384 406 0.97 8 24 0.0013 0.059 14.2 4.8 1 23 412 434 412 434 0.98 9 24 0.09 4 8.5 1.2 2 23 442 462 441 462 0.94 10 24 0.00041 0.019 15.8 0.2 3 23 470 490 468 490 0.98 11 24 0.00023 0.01 16.6 2.7 1 23 496 519 496 519 0.96 12 24 0.57 26 5.9 0.5 2 14 526 538 525 539 0.87 13 24 0.00015 0.0068 17.2 1.2 1 23 751 773 751 773 0.97 14 24 0.018 0.81 10.7 0.5 2 23 779 800 778 800 0.97 15 24 0.0011 0.048 14.5 2.5 1 23 806 828 806 828 0.96 16 24 0.00072 0.032 15.1 1.5 1 23 834 856 834 856 0.98 17 24 0.00011 0.0048 17.7 3.0 1 23 865 887 865 887 0.97 18 24 5.4e-05 0.0024 18.6 2.3 1 23 893 915 893 915 0.97 19 24 0.081 3.6 8.6 0.3 2 23 923 944 922 944 0.95 20 24 5.6e-06 0.00025 21.7 2.6 1 23 950 972 950 972 0.97 21 24 0.00019 0.0087 16.9 6.0 1 23 978 1000 978 1001 0.96 22 24 0.0014 0.065 14.1 5.6 1 23 1007 1029 1007 1029 0.97 23 24 2.8e-05 0.0013 19.5 4.1 2 23 1037 1058 1036 1058 0.96 24 24 2.3e-07 1.1e-05 26.0 0.5 1 23 1064 1086 1064 1086 0.99
Sequence Information
- Coding Sequence
- ATGGTTAAGAAAAACACAGACGTTTGTACCACTGTTGGTGGAATTATGAAGTTACATTGTAATCCTGAGGACTTAAACAAATATATGATATTTAATTGTGGATTTCTCAATAAAACACGCGAGGGATTGACAGTTTTTATACCAGAGGATGAAGTGAAGTATTTGCCTGTTGTTGATGTTGGTAATTTTGACTGGTTATTGCAAAGTGAAATTAAGTATGAATCCTTTAAAGGCAAACTAACTGTAGAGCAATGCAAAGCAGAGAATAATGTTCATGtggattataataatacatcagAAGAAACACACAATAATATCAGTGAAAGAGTGTTCAAGTCAGAAAATGTATCTGATACATCAGAAGTACAAACTCATAGTAATTGGGATGAATGGTCAAATGATAAAGAAGCCTCTAATGATAGTCTAGACAGCGTGCCATTGAAGAAGTTGTTTACTATTGCTGAGAATAATGTTGCCAGCGACATcaaacataataatgttaatactTGTATTGTTCCCAGTACACAAAACTCTgagaaacaaaaagaaatatgTTTAAATCAAGAAGAGAATCCTAGAAATAATGTAGACAATAAACAATCTGCTGATAAAAAGAAACGACACAAGTGTGATTTATGTGAAAAGAGTTATTTCAACCTCCAAGACATGAGATCCCACCGGACTACAcacttgggagaaagaagaaTGCGACATAGTTGTGATTTGTGTGAGAAGAGCTACATCAGTGTCCGAGACTTGAAATTCCATCGAAATTCACATTTTGAGGAAAAAAAAGAACGGCATAATTGTGACTTATGCGAAAAGAGTTACGCCCATGTTCGAGACTTGAGATACCATAGGAAAACTCATTTCGGGGAAAGCACACGACATAAGTGTGACTTGTGTGACAAAAGTTACGCCAGTCCCCGAGATTTGAAAACCCATCGAGCTCTGCATGTCGACGGAGGAATAATACCAACTAATTGTGAAATCTGTTCTAAAACATTCAAGACTAGCAAAGGACTAAAGGATCACATGGTAAGCCATAAGAATGAAAAGGAGTTATCTTGTCATCTGTGCGCCAAGACGTTTCATCATAAGTGGCTTCTGAATAAACACATAAAGAGACACCTGCCTAAAGAGAAATCCTTTCATTGTGATCAGTGCACAAATAGTTACGTATCATTGAGTCGCCTGAAAGATCATCAGTTAGTTCATTCAGATGTCAAGTCGTttgaatgtttaatttgtaacaAGAAATTCCATCGATCTCTTCAACTCAGACGACATAAACTACGCCATGGTGAAAATAGAAATAGGGTACAATGTGATATGTGCGGTCTGAGTTTCAAAGGGAATCATTTGAAGGATCATAAGATGATACATTTAAATCAAAGACCATTTGGTTGTGATGAATGCGGgaagacattcagaataagACGTGTGTTGATAGAACATATCCGGATACACACTGGGGAAAAGCCCTACAGATGCCAACTGTGTGATAAGGCCTTTGCAAGGAAGCTCTCCCTCAAGTCACATCATCAGTTACAGCATGAGAAGAATGAACCTCTACATTGTACCATCTGTAGTAAGACATTCTACTCTAAGGGAGAAAAGGATACAAAAATGGTTAAGAAAAACACAGAGGTTTGTACCACCGTTGGTGGAATTATGAAGTTGCATTGTAATCCTGAGGACTTAAACAAATATATGATATTTAACTGTGGATTTCTTAATAAAACACGCGAGGGATTGACAGTTTTTATACCAGAGGATGAAGTGAAGTATTTGCCTGTTGTTGATGTTGGTAATTTTGATTGGTTATTGCAAAGTGAAATTAAGTACAAATCCTTTAAAGGCAAACTAACTGTAGAGCAATGCAAAGCAGAGAATAATGTTCATGtggattataataatacatcagAAGAAACACACAATAATATCAGTGAAAGAGTGTTCAAGTCAGAAAATGTATCTGATACATCAGAAGTACAAACTCATAGTAATTGGGATGAATGGTCAAATGATAAAGAAGCCTCTAATGATAGTCTAGACAGCGTGCCATTGAAGAAGTTGTTTACTATTGCTGAGAATAATGTTGCTAGCGACATcaaacataataatgttaatactTGTATTGTTCCCAATACACAAAACTCTGAGAAACAAGAAGAAATATGTTTAAATCAAGAAGAGAATCCTAGAAATAATGTAGACAATAAACAATCTGCTGATAAAAAGAAACGACACAAGTGTGATTTATGTGAAAAGAGTTACGTAAGTCCTCGAGATTTGAAATCTCATCGGGCTATGCACTTAGGGGAAAGAATCAAGTGTGAAATTTGctctaaatatttattggatagCAAAAATCTAAAACGTCACCTTTTAGTTCATAACAAAAAATCACAACATGATTGCGAAATATGTTTAAAAAGTTTTAAGACTAATAAAGGATTTAAAGATCACCTTTTAAGTCATAGGGATGAAAAGCAGTTTTCTTGTGATCTGTGTCCTAAAAAGTATAATCTTAAATGGGTTTTAAGGAAACACATGAAAAAACATTCGACAGACATTAAAGATGGACCTTTTCATTGTGATCAATGCACAAAGAGTTTCGTATCATCGAGCTATCTGAAAGTCCATAAATTAGTGCATACAGGTGACAAGACATTTGAATGTTCGATTTGTAACAAGAAATTTTATAGATCTATTCAACTTAGCCGGCACAAAATACGTCACGATGAAAATAGAAATAAGGTACAATGTGATATGTGCGGTTTAAGTTTTAAAGGAATTCATATATTAAAGGCCCACAAAATGATACATTTAAATCAAAAGCCATTTGCTTGTGATCAGTGCGAGAAAGCTTTTAGAACAAAACATCATTTGATAGAACATATCCGGATACACACTGGGGAAAGACCTTATAAATGCCAACTCTGTGATAAGACGTTTGCAAGAAAAGAATCAGTAAAGAAACATCATCAGTTACATCATGAAAAGAATGAACCTCACAGTTGTTTCATCTGTGGCAAAACATTCTACTgcccatatgcattaaaaaaacacCTCAAAACACATGATGAAGACAATAAAAAACTTTCCTGTACGTATTGTGATATGAGATTTTCAAAGCAGAGTCACTTAAAGCGTCACACAATGCTTCATACTGGAGAAACTCCATATGAATGTTCTGTTTGTGGAAAGAAGTTTATCCAAGCCTCGAACATGCGATCCCATATGAAAgtacacaataaataa
- Protein Sequence
- MVKKNTDVCTTVGGIMKLHCNPEDLNKYMIFNCGFLNKTREGLTVFIPEDEVKYLPVVDVGNFDWLLQSEIKYESFKGKLTVEQCKAENNVHVDYNNTSEETHNNISERVFKSENVSDTSEVQTHSNWDEWSNDKEASNDSLDSVPLKKLFTIAENNVASDIKHNNVNTCIVPSTQNSEKQKEICLNQEENPRNNVDNKQSADKKKRHKCDLCEKSYFNLQDMRSHRTTHLGERRMRHSCDLCEKSYISVRDLKFHRNSHFEEKKERHNCDLCEKSYAHVRDLRYHRKTHFGESTRHKCDLCDKSYASPRDLKTHRALHVDGGIIPTNCEICSKTFKTSKGLKDHMVSHKNEKELSCHLCAKTFHHKWLLNKHIKRHLPKEKSFHCDQCTNSYVSLSRLKDHQLVHSDVKSFECLICNKKFHRSLQLRRHKLRHGENRNRVQCDMCGLSFKGNHLKDHKMIHLNQRPFGCDECGKTFRIRRVLIEHIRIHTGEKPYRCQLCDKAFARKLSLKSHHQLQHEKNEPLHCTICSKTFYSKGEKDTKMVKKNTEVCTTVGGIMKLHCNPEDLNKYMIFNCGFLNKTREGLTVFIPEDEVKYLPVVDVGNFDWLLQSEIKYKSFKGKLTVEQCKAENNVHVDYNNTSEETHNNISERVFKSENVSDTSEVQTHSNWDEWSNDKEASNDSLDSVPLKKLFTIAENNVASDIKHNNVNTCIVPNTQNSEKQEEICLNQEENPRNNVDNKQSADKKKRHKCDLCEKSYVSPRDLKSHRAMHLGERIKCEICSKYLLDSKNLKRHLLVHNKKSQHDCEICLKSFKTNKGFKDHLLSHRDEKQFSCDLCPKKYNLKWVLRKHMKKHSTDIKDGPFHCDQCTKSFVSSSYLKVHKLVHTGDKTFECSICNKKFYRSIQLSRHKIRHDENRNKVQCDMCGLSFKGIHILKAHKMIHLNQKPFACDQCEKAFRTKHHLIEHIRIHTGERPYKCQLCDKTFARKESVKKHHQLHHEKNEPHSCFICGKTFYCPYALKKHLKTHDEDNKKLSCTYCDMRFSKQSHLKRHTMLHTGETPYECSVCGKKFIQASNMRSHMKVHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -