Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0018 1.8 9.0 0.1 14 44 47 74 42 74 0.88

2 5 4.6 4.5e+03 -1.8 0.2 18 23 83 88 79 105 0.72

3 5 4.4e-05 0.043 14.2 0.2 13 44 141 169 137 169 0.91

4 5 0.077 76 3.8 0.0 18 43 178 200 172 201 0.80

5 5 0.024 24 5.5 1.1 15 44 242 268 233 268 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0018	1.8	9.0	0.1	14	44	47	74	42	74	0.88
2	5	4.6	4.5e+03	-1.8	0.2	18	23	83	88	79	105	0.72
3	5	4.4e-05	0.043	14.2	0.2	13	44	141	169	137	169	0.91
4	5	0.077	76	3.8	0.0	18	43	178	200	172	201	0.80
5	5	0.024	24	5.5	1.1	15	44	242	268	233	268	0.90

Coding Sequence: ATGGATGGAAGTTCTTTAGGTGTGTCTGCCTTGGGTGATGAAGTTCAGAAGGATGGAGTGAATGGAAGTAAGAAGAAAAGGATCGAAAGCAAAGAGGACCAGGAAGACAAGTTAAAGGAGTGCGGAGTACAAGATGAGGAGGGCACCTGGTGGTGCTCCACGTGTGGGACGAAATTTATTAGTACAATCACCTTCATCTATCATCTCAAGAGAATCCATAAAATTAAGATTGGCAACTTTGAACACAAGTGTCCACATTGTGATATGGACTTCAGAACAAACAATGCCTTGAAGGGGCACACGCAGACTGTACATCTGGACCCTAAGGTACGAGATGATGTAGTGAATAGAAGTAGGAAGAAGGCGATCGAAAGTAAAGAGGAGCTGGAAGACAAGTTAAAGGAGTGCGGGACACAAGATGAGGAGGGCAACTGGTGGTGCTCCACGTGTGGGAAGAGGTTTACTAAGACAATCACCTTCGTCTATCATCTCAAtagaaatcataatattaaGATTGGCAGCTTTGAATACAAGTGTCCACTTTGTGATATGGACTTCAAAGAAAACCAGGGCTTGAAGGCTCATTTGAAAtctatacacacacacactcgtAAGGACCCTAAGgaATCTCTAAGAAAGAAGAAAGCAGTGAACAAAGTTATCATAGAGTCTGCAACAGTGGGATTGGATGTAGTAATGGAACATGGTAAACGTGACAAATATGGCACGTggttatgtaataattgtagtgAAATGTATGAGAAGAAGTCTCAATTTATTATTCACTTGAAGAAAGCTCACAACATTTGTATAAAGAaagttacataa
Protein Sequence: MDGSSLGVSALGDEVQKDGVNGSKKKRIESKEDQEDKLKECGVQDEEGTWWCSTCGTKFISTITFIYHLKRIHKIKIGNFEHKCPHCDMDFRTNNALKGHTQTVHLDPKVRDDVVNRSRKKAIESKEELEDKLKECGTQDEEGNWWCSTCGKRFTKTITFVYHLNRNHNIKIGSFEYKCPLCDMDFKENQGLKAHLKSIHTHTRKDPKESLRKKKAVNKVIIESATVGLDVVMEHGKRDKYGTWLCNNCSEMYEKKSQFIIHLKKAHNICIKKVT

Sequence clustering based on sequence similarity using MMseqs2