Cdis001715.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- lov
- Assembly
- GCA_963576895.1
- Location
- OY756359.1:7913649-7921465[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-18 2.9e-15 56.1 0.0 1 44 318 361 318 362 0.96
Sequence Information
- Coding Sequence
- ATGCAGGCACCACCGGAGCAAGAACATTATAGCCTAAGATGGAACAATCACCAACATCATCTACTAAGGGCCTTCGCTGCCTTACTACGGGCGGAGGCTCTAGTGGATGTAACTCTCGTCTGTGCCGAAGGTCGTGTCAGAGCGCATAAAGTAGTCCTTAGTGCGTGTTCTCCATTTTTTAGGCGAATTTTCTCAGAAAACCCATGCAAACATCCCGTAATAGTACTCAAAGATTTCCACGGTTGGGAAGTTCAAGCAGTAGTCGACTTCATGTACCGTGGGGAGATTAGTGTAGCCCAAGAACAGTTGAAGATGATTATCAAAGCTGGAGCTGCTTTACAAGTAAGAGGACTTGTTGAACAGGATGGAGGACGGGAAGCTACTCCCGAGCAAGTAGGAACCCCTTCTCCTGAACCTGATTTATCTTTTGACGGTATGGAAGATACCGTGCCAGATGTACCTGCTAGTTCCCCTGTGTTCCGACCGGAGGCGTGTTGTTCTCCCCTTCCAAGACGAAAACAGGCTAGACCAAGGAGAAGGTCCGGAGAAGGTCCTCAGGATCTTTCCGTAGGGTCACGGCGGTCTAGTCCAACAGGATCATTAAGGGAAGCAAGACGACCAAAGCTAGACAACGAGGAGCCTAGACATAGTCCGGACCCTCCTGTGCCACCGCCCCCACCTCGTCTGCCACCCCCCGAACCTATGCCCTACCCGCCTGCACCATCAGTCTCCGCTTTGGCGCTTACACCACCTCACATGTTTGGCCTGGACTCTGGGTTAGGCCTCTTCCCTCCGGGAATGGATCCAGGTAAACTCTACAACCCACTCATGGAGATGCCAGATCCCAGGGGGCCACCTCATGACCCGCACAATATGTTCTCGAGCGTCAAGAAAAAATGGCGTCCAAAGGGCCAACATAGTGCCCCACGTGGAGGACCACCAAGGTCATGGACCAACGCGGAGTTGACGGAAGCCCTTCAACATGTGTGGAATAAGAAAATGACCACAAGCCAAGCATCTAGGATATTCGGAATTCCTTACAATTCCCTTCTTATGTATGTACGCGGCAAATATGGAAAAAGCCTAAAATTGGAGCAGCTCAGAAAAGATTGCATCGGCGGCCCATTAGACATGCTTAGTTTAGGGCCtggaaacaataataacaaccaAACATCCAAACATCACGTCAAGGACGAAGGAATGAACATGAACCCACGGCCAGCGAGTTCAGAACCAGATTTGATGTCAAATCCAATGTTCAATCCCTTCACTCAAGGTTTCTATCCAGAGTTCCCGCCAGGTTTTCCAATGCCGCTGAATATGTTACATCTGCTTCCTCACAACGAAAAGACTAGAGATATATACGGTCAAACGTTACCCCTGGCCTTAGATATGTTAACTAGTAAAGAGGACGATTGTAAAAGTGATAGGTCTAAGGAAAATTCGGCTGACGAAGATACAGAGAACATGTTTAGACCACCACTGCTCTCTAGAGACGAGAGGAGAGAAATATTACAACACAACGGGCAAGACTAA
- Protein Sequence
- MQAPPEQEHYSLRWNNHQHHLLRAFAALLRAEALVDVTLVCAEGRVRAHKVVLSACSPFFRRIFSENPCKHPVIVLKDFHGWEVQAVVDFMYRGEISVAQEQLKMIIKAGAALQVRGLVEQDGGREATPEQVGTPSPEPDLSFDGMEDTVPDVPASSPVFRPEACCSPLPRRKQARPRRRSGEGPQDLSVGSRRSSPTGSLREARRPKLDNEEPRHSPDPPVPPPPPRLPPPEPMPYPPAPSVSALALTPPHMFGLDSGLGLFPPGMDPGKLYNPLMEMPDPRGPPHDPHNMFSSVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDMLSLGPGNNNNNQTSKHHVKDEGMNMNPRPASSEPDLMSNPMFNPFTQGFYPEFPPGFPMPLNMLHLLPHNEKTRDIYGQTLPLALDMLTSKEDDCKSDRSKENSADEDTENMFRPPLLSRDERREILQHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00675060;
- 90% Identity
- iTF_01012524;
- 80% Identity
- iTF_00299248;