Crun003825.1
Basic Information
- Insect
- Cephus runcator
- Gene Symbol
- -
- Assembly
- GCA_030142495.1
- Location
- JARQTC010000384.1:13831-18259[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-08 1.1e-05 25.1 0.1 6 38 60 91 55 97 0.89 2 2 6.2 6e+03 -2.8 0.0 16 23 176 184 171 185 0.74
Sequence Information
- Coding Sequence
- ATGGCAGCGACTAGAAAGAAtcgagagaagagaaaaaaaagtgaattaaaaaaagtcaatttgaAGAATAATGCAAAGTGTTCGAAAATTACAAGGAAGACTCATGTATTAGTTAATCGTTCAAGAAAAACTAAACAGAACAAAGTTAAAAGGAAGAATTATTCTTCTGAAAGTGTTGAGAATGCTTTAAAAGCTTTAGATACCGGCATCTCTATTAGAAAAGCTGCTGCTGCGTATGGAATTCCAGTAGCCACACTTGCGAGGAGGAAAAATCATCCTGTTGAATTCAAAACAAAACCAGGACCCGATACAGTTTTATCAAAAGCTATTGAGCAAGATATTGTTAATTGGATTCTCTACAAAGCTGAACGAGGCCAGCcagttaataaaaatgaacttCTTGATTCTGTGCAGTTTTATGTGAAAATGAAGGGGATAGCCACACCGTTTCTTCACAACCGTCCTGGGCGACATTGGTTTGAAGGGTTTAAGAAACGTCATTCTAGCACAAGTATCAGAAAACCACAGCATCTGAGCGTCAGCAGAGCAAGTGTTACTCGAGAAGATTTGCAAGAGTGGTTTGAtgagcaagaaaaatatttaaaaaagaataatttattgcacATTTGTCCTAgcagaatttttaattgcgaTGAATCAAGTATCTTAATATGTCCAGATTCAGATAAAGTATTGACTACAAAAGATACTCGTGCAGTTTATAAAGTAGCAGATGGGGGAAAGGAATGTCTCACTGTTCTATTTATGTATAGTGCAGATGGCACTCGTGCTCCACCAATGTTAATGTTCGCCTACAAAGAAGGAGTTCCAAAGAACATTGCTGAGAAAACACCAAGAAACTGGGGCATCGATATATCAGATACTGGCTGGATGAATGCTGAGActttttatgaatatattacCAATGTATTCTATCCATGgttaattgaagaaaaagtgCAATTCCCAgtgataatatatttagataATCATTCATCTCATATAACAGTCCCTTTGGTTGGTTTTTGTCGAGACAACCAGATTGAGTTAATAGGATTGTATCCTAATTGTACACACGTGATGCAACCATTGGACATCGCACTCTTTCATCCTTTTAAGGAATCTTGGAAAAAAACTGTCGCAAAGtggaaaatgcaaaataatgtaatgaaattgaaaaaagaagattttcCTGCAGTTTTGAAAATGGCTATGCACAATATgctaaaagagaaagaagctATTGTTAGTGGATTTAGAGCATCTGGATTAGCACCGTTTAATCCTAGTGCTGTCGTCtatgatatttttcagaagagaaagaagaatttaAATTTGGTACAAGAGCAACAAGATTTAGGTAATCTACCAGAGGATAGTACACAACATCtgcgaaaatttgaaaacaatcTTTCAGCTGAACTGCTTCAAGAATTCAAAGATGCTTCGTTGACTGGTCAATGGACTGGAGATGAACCGACATCTGATCAATCGATGGCGATTATTACCTCACCCTACACTGAGGATCCTGAAAATTTGGAGTCTATACGGAGTAAAAACTACAcacaaataattttggatgaaaataatcaagCAGAAAGTAACCCAGGGTCTCGTCTTACAACTACCGATTTTGAAGAAGTTTGTAATTCCAGTAGTCAAGGCAATATCGAAGTTGACAAGGAGAATAATAATGTGATAGCTAATAAAGGAGCTGATATAAATCCCGATGAATATTTTGCAAAGGCATTTACTTTGCCAACAGAATATttacctaaaaaaaagaagattaagGTGAAAGGTTCTGGTAAACCAAAATTACCCGCAGCAGGAACAGCTGATGAATGGTGA
- Protein Sequence
- MAATRKNREKRKKSELKKVNLKNNAKCSKITRKTHVLVNRSRKTKQNKVKRKNYSSESVENALKALDTGISIRKAAAAYGIPVATLARRKNHPVEFKTKPGPDTVLSKAIEQDIVNWILYKAERGQPVNKNELLDSVQFYVKMKGIATPFLHNRPGRHWFEGFKKRHSSTSIRKPQHLSVSRASVTREDLQEWFDEQEKYLKKNNLLHICPSRIFNCDESSILICPDSDKVLTTKDTRAVYKVADGGKECLTVLFMYSADGTRAPPMLMFAYKEGVPKNIAEKTPRNWGIDISDTGWMNAETFYEYITNVFYPWLIEEKVQFPVIIYLDNHSSHITVPLVGFCRDNQIELIGLYPNCTHVMQPLDIALFHPFKESWKKTVAKWKMQNNVMKLKKEDFPAVLKMAMHNMLKEKEAIVSGFRASGLAPFNPSAVVYDIFQKRKKNLNLVQEQQDLGNLPEDSTQHLRKFENNLSAELLQEFKDASLTGQWTGDEPTSDQSMAIITSPYTEDPENLESIRSKNYTQIILDENNQAESNPGSRLTTTDFEEVCNSSSQGNIEVDKENNNVIANKGADINPDEYFAKAFTLPTEYLPKKKKIKVKGSGKPKLPAAGTADEW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294394;
- 90% Identity
- iTF_00294394;
- 80% Identity
- -