Crun005453.1
Basic Information
- Insect
- Cephus runcator
- Gene Symbol
- -
- Assembly
- GCA_030142495.1
- Location
- JARQTC010000416.1:1540184-1544397[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-12 1.2e-09 37.9 0.0 1 39 303 342 303 346 0.90 2 4 3.7e-12 3.5e-09 36.3 0.1 2 39 358 395 357 398 0.94 3 4 1.3e-18 1.3e-15 56.9 0.0 2 45 413 457 412 457 0.97 4 4 1.5e-18 1.5e-15 56.7 0.1 1 42 464 506 464 507 0.97
Sequence Information
- Coding Sequence
- ATGGAGCCAGCCACGCCGAGTACACCGGCAGCCAACCCCTTGCCCCCGACGTCGCCTAATCGCGCCACCCCGCGCTTGATTAAAGAACAGAGCCGCTCGGCTGCTGCAAGAGGAGGGTCCCTGCTCAAGACAGCCGATCAGCTGAAGATCAAGGGGCTCTGCGAAGTGCCAGAGAGCAAGGACGGTCCACCGTCGGTCAGTCTGAGCTCGCCAGGCATAGAACAAGGCACACCGCGGCTGAACTACACCAAACTGAAGAGGCACCATCCCAGGTACAAGAGACCCAGGTTCGAGCCCCGAACCGACTCCAGGCACTACGAGAAGTATAAAGAGGAAGAGGCCACCGAGGCCTTCGGTCGTGACGATAAGGAGAATCACAGAGGCTGGCAGACCGAGGATGAGGAGTGCGCAGAGGCCGCAGTAGTCCTGGAGTCCTGCCAACGTGACAACAACAACGGTAACAGtacaaataacaataacgGTGACATGTTTTGTCACACAGGGTTAGGTCACTACGGTCATCATCCGGACCCGGGAGAGGTCGATCTGCCCCCTGAGACTCAGCCCACACCCCCCAGCGCTACTTTAGTTGGCACCACGATCACCCACCTGAGAGATCCCGATCATCACTCGACAGATATCCAGAATTGCGACAGTGTCAAGATCAAGTTCGAGACTTTGCACACGATGGATTCCTCGGATACGATCGATATCGATAGCCACATGTCGGACAGGGCGAGTGTGAGTTCGAAGAACGCTGTGGATAACGATAATATGATGATGATCACGCCAGAATTATTGGGCCTCATGCCATCGGGAAGTTCGGTACATTCGGATTCCGGTGAGACTAATGCGAGAGGGCACTTGGGTCAGTCTGGCTCGCATCATCATGGTTCCAAGTCTTGGACGCAGGAGGACATGGACGCGGCCTTGGAGGCCCTTAGGAATCACGATATGAGTCTTACAAAAGCATCAGCAACATTTGGTATACCATCTACGACCTTGTGGCAGCGTGCTCATCGTCTTGGGATTGATACTCCAAAAAAGGATGGACCCACCAAATCTTGGAGCGACGAGAGTCTGAACAACGCGCTGGAGGCACTCAGGACCGGTACCATCTCGGCTAACAAGGCTTCAAAGGCCTTTGGCATTCCCTCGAGCACCCTGTACAAAATTGCTAGGAGAGAGGGTATCAGATTAGCTGCTCCCTTCAACGCGAGCCCCACTACTTGGTCTCCTGCTGACCTGGACAGAGCCCTCGAGGCAATAAGGTCCGGTCAGACGTCGGTGCAAAGAGCTTCGACCGAATTTGGAATTCCTACAGGAACTCTCTACGGGAGATGCAAGAGGGAAGGCATCGAGCTCAGCAGAAGCAATCCGACGCCTTGGAGCGAAGACGCCATGACGGAAGCTCTGGAAGCTGTTCGATTGGGGCACATGAGCATCAACCAAGCAGCCATTCACTATAATTTACCATATTCATCCCTTTATGGACGATTCAAGAGAGGGAAGTACGAAGAACCTGTTGTCAGTGAAATGTCTCAAGATGGCGGCAGCCCTCACTATCATCAGAGTCCTAATCAGAATCACTCCACTTCTCTTCCCGATCAAATGCCCTATCAGGGCAGCTGA
- Protein Sequence
- MEPATPSTPAANPLPPTSPNRATPRLIKEQSRSAAARGGSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPGIEQGTPRLNYTKLKRHHPRYKRPRFEPRTDSRHYEKYKEEEATEAFGRDDKENHRGWQTEDEECAEAAVVLESCQRDNNNGNSTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAVDNDNMMMITPELLGLMPSGSSVHSDSGETNARGHLGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEMSQDGGSPHYHQSPNQNHSTSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00292363;
- 90% Identity
- iTF_00292363;
- 80% Identity
- -