Crja005460.1
Basic Information
- Insect
- Cephus rjabovi
- Gene Symbol
- SCAND3
- Assembly
- GCA_030264185.1
- Location
- JASCRG010000426.1:134419-137280[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00034 0.028 15.2 3.2 1 23 360 382 360 382 0.98 2 15 0.00021 0.018 15.8 0.9 3 23 390 411 388 411 0.94 3 15 1.5e-05 0.0012 19.4 1.2 2 23 508 529 507 529 0.97 4 15 1.3e-05 0.0011 19.6 2.3 1 23 535 557 535 557 0.98 5 15 0.00015 0.012 16.3 0.3 1 23 563 585 563 585 0.97 6 15 1.2e-06 0.0001 22.9 1.4 1 23 601 623 601 623 0.98 7 15 8.9e-06 0.00073 20.2 1.2 3 23 631 651 629 651 0.98 8 15 8e-06 0.00066 20.3 1.9 1 23 657 679 657 679 0.98 9 15 0.0041 0.33 11.8 0.3 1 23 685 707 685 707 0.99 10 15 7.6e-06 0.00062 20.4 0.3 1 23 713 736 713 736 0.94 11 15 2.3e-05 0.0019 18.9 1.3 1 23 742 764 742 764 0.98 12 15 0.0005 0.041 14.7 4.7 1 23 770 792 770 792 0.98 13 15 7.4e-06 0.00061 20.4 0.2 1 23 798 821 798 821 0.96 14 15 2e-05 0.0016 19.1 0.8 1 23 827 849 827 849 0.95 15 15 4.4e-06 0.00036 21.1 4.5 1 23 855 877 855 877 0.99
Sequence Information
- Coding Sequence
- ATGGCAACTGACTGGATGACAGAGAAGATTTCAATGAAGAATGTGCTAAGTCAAGTTTTGAATGCAAGAACTGAGTCAGATTTTATATCTGTCAAACAAGAAATGGAATTATTTGATGAAACTTTATGTCCTAAAACGCAAGAGATAGGAATTAATCGCGATCAATGCATTGATAAGCAAAAGACTAATGAAACTGATGCAATGCCATCTTCTTCAAAAGCACAACCAGCTaGTACTTTCCTGTCACATAATGGAGAATCCAACACAGATGTTTTGCCTGCAATTCCTAACGAAAGAACTTTTGTATTAGCAAGTGTCATAAATCAAGACTCATTGTGTAGAGGTCAAATTGATGTAATGGAGATACAAGCTGAAGAAGAacataattacaaatatttgttcaTTTATGAAGATCAGTTTTCTAAATTTATTGTTCTCAAAGCTTTACGAACTAATGCTATCAAAGAAGTCACACTGAAACTCTTTGATGTACTGACAATCATTGGAGCACCGCGAATTTTGCAAAGTGGTAATGGTCGCGAATTCACTGAACGTGTGGTGCGCGAATTACGTTCACTTTGGACGAATCTTACAATAGTGCATGGGAATGTGTCAAAATGTGATGAAAGCAGTAAGAGAGATTACCAGAATCTTATAAAATCATGGCTCATAACAAATCCATCAAAAGTCTGGTATCAAGGTCTTAAATTTATACAGATCCTTGAAAATACAACTTTTCAATCCAAGGATGGTAAAATTCCATATGATTTACTATTTGGCCGTAACGTTCACAAGGTATGTGAGAACGGGAGTCTCTCTAAAGAAGTTATGAACAAAATTTGGAGTGAAGAACAATTGTACGAGCATCTCAAGGAGAATGGAAGCATCTCTCTTGATATTGAATTTGGAGACAGCCCAGTTAAATCACCAAGAAATAACAGCAGTACAAATGGTTTTAACTTTGTGAATGTAAAAAGTGAAATGTCACTGAGCACAAATCAAATAGAAGATTCGCAATCCGACGAAGAAAGTAGTACAGGTGATAGGTTACAGACACAAGACACGGACAAGTATCTGTTTAGGTGCAAAATCTGTCAGAAACAATATATGAAGTTAGGTCATTTAAAGAATCATATAAAAGCACATGTAAAAGCAGGTCGACTTGATTGTACTATTTGCCACAAGACATTCCGTCTTCCAAGTCTATATGATAATCATATGAATGAAGTTCACAGTCAAGAAAAAATCTTCAGTGATAATTCTTTTCATTCTGTAAAAAGAATGGATACGGATGACATTTCATCAGAAAAATCCGAAAGTAAAAACGAGAAGTTAGAAACTGGATTGGAAGAGAATCCTTTAGAAATAACCGAACGCACAAGTcctgagaaaaaagataacatGCTCCTCTGTATCTCCAACAAAAGTCacaaaaaaaaccttaaaCGCACAAACGCCCTAGCCAGAAGAAAAGTTTCCAAAGAGAATCGTCTAACTAAAGTGAATGGGGACCCATTGCTCGAGTGCACATATTGTCAACAAAAGTTTGACTTTCCAAGTGTCTTAAAAAGACACATGCGGTCTCATACAAATGAAAGACCTTACGTTTGTCAAGTCTGCAACAAGAGTTTCAAGCAGTTAGGACATCTGAGTCAGCATTCTTTGACACATACGGACTACAGGTCTTTTCAATGTGCAATTTGCGGAGTAAAATTTGAGTCTCTGGACAGCTTGAAGAATCATTCGCAAAATCATAAAGGAGAATCAGTTATATATCGACCAAAGGAGATTTATCGCCTCTTCGAATGCGACAACTGCAAAAAGGTGTTCACAACAAAAAGTGTTCTGGAACGTCACATATTTACTCATACGCATGAGCGTCAATTTGGCTGTAAAGTATGTGGAAAAAGATTCAAACAAGCAGGTCACGTTAAGTCCCATATGCTGATTCACACAGGAGAACGTAAATTCGAATGTACTATATGTTCAAAACGTTTTAGCCTATCAAATTCTCTCAAGAAACATATGTACGTACACAACGGCGAAAAGCCTTATCAGTGTGACGTATGTGGTGCCAGGTTTCTTGAAAAACGATATCTCAATGGACACTTAATGACCCACACAAATGAGCGTCCATTCTCTTGCAAAATATGTGGCAAAAGGTATACCCTTGCAGATACCCTGAGGCGTCATATAAGTGCAGCTCATGAGGATGGCAGAACCTACCAGTGCGAAATCTGTGCAAAAATGTTTAAGCAGCTTGCGCACTTATCAGTTCACAAGAAAGTGCACAACGATGAGCGGCCATTTCAGTGTCACCTTTGTGAGAAGAATTTCAAGCACAAGAATGTCCTCAAGTCGCACCTGGCGATACATGCTAATGTAAGACCGTTCGAGTGTGACGTTTGTAAAGCCACCTTTGTGAGAAAAACTAATTTACAAACTCACATAGCATCGGCTCATATGAATGAACGTCCTTATGCATGTAAGATATGCGATAAGCGCTTCAAGCAAATCAGTCATCTGAACGGTCACGTTGTGGTACATAGTAATTCTATGCCATATCAGTGTGACTTTTGTGACCGTCGGTGTAACAGACTAGATAATCTAAAAAAGCATATGCGTCTGcatactaaaaataaagagtaa
- Protein Sequence
- MATDWMTEKISMKNVLSQVLNARTESDFISVKQEMELFDETLCPKTQEIGINRDQCIDKQKTNETDAMPSSSKAQPASTFLSHNGESNTDVLPAIPNERTFVLASVINQDSLCRGQIDVMEIQAEEEHNYKYLFIYEDQFSKFIVLKALRTNAIKEVTLKLFDVLTIIGAPRILQSGNGREFTERVVRELRSLWTNLTIVHGNVSKCDESSKRDYQNLIKSWLITNPSKVWYQGLKFIQILENTTFQSKDGKIPYDLLFGRNVHKVCENGSLSKEVMNKIWSEEQLYEHLKENGSISLDIEFGDSPVKSPRNNSSTNGFNFVNVKSEMSLSTNQIEDSQSDEESSTGDRLQTQDTDKYLFRCKICQKQYMKLGHLKNHIKAHVKAGRLDCTICHKTFRLPSLYDNHMNEVHSQEKIFSDNSFHSVKRMDTDDISSEKSESKNEKLETGLEENPLEITERTSPEKKDNMLLCISNKSHKKNLKRTNALARRKVSKENRLTKVNGDPLLECTYCQQKFDFPSVLKRHMRSHTNERPYVCQVCNKSFKQLGHLSQHSLTHTDYRSFQCAICGVKFESLDSLKNHSQNHKGESVIYRPKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLIHTGERKFECTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRYLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACKICDKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00298497;
- 90% Identity
- iTF_00298497;
- 80% Identity
- -