Crja017914.2
Basic Information
- Insect
- Cephus rjabovi
- Gene Symbol
- -
- Assembly
- GCA_030264185.1
- Location
- JASCRG010016312.1:268-2007[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.7e-09 6.7e-06 26.0 0.0 5 35 15 46 13 51 0.93
Sequence Information
- Coding Sequence
- ATGgaagagaagaataagaaaggGAAATGGTAccaaaaaagtttacaaacTGCgctagataaaattttatccaaagaACTGAGTTTGAAAATAGCTTCATCGCATTACAACATCCCAAAAAGCACTCTATATGATAAGATATCGGCATTGAACCGTGGAGAAGAAGTGACGTTGCAACCAAAGATCGGTAGATTCACTAACACCTTCTCACCCGAGTACGAACAAGTTTTAGTGAACCACGTACAAGATTTGTCTAATAGATGTATGCCGCTGatgaaaaaggaatttttaaagttagcTTTCGACTTGGCTGAATTGATGAAGATCCCTCATCGCTTTAACAAAGATAAAGGTACTGCCGGGAAGCatttttactataattttatGCGGAGACATCCTGACCTTTCGCTGAGAACACCAGAGTCGACGAGCATGATGCGAGCCATAGGGTTTAATAAACCACAAGTGGATCTCTATTATGACAATCTTGAAAAACTATTTACACAGTGCAAGTTTTCACCTTCCAATATTTATAACTGTGATGAAACTGGAATCAGCTGCGTTCACAGGCATCAAAATGTTCTTGCTCCGAAGGCTGCCCGTCAAGTAGGAAAGCTCACTTCTGCTGAGAGGGGCAAAAATATAACAATCTTATTTTGCATGAGCGCTAGCGGCCACTTCATACCGCCTATTTTTGTCTTCCCTAGGCAAAGGATGAATGATCGACTCATGATTAATGCTCCGGCCGAAATTGTAGGCGTGGCCCAGCCAAAAGGATGGATGAATTGTGATTTATTTCTACATTGGTTGCAGCTATTCGTAAAACACTCAAATCCGACCAAAGACAAACCTGTGCTGCTTCTACTGGATGGCCATTGTAGCCACAAGACACTGGCGGTCATCAATTTTTGCCGAGATAACAATATTCATTTGATAAGCTCACCACCACACATAACCCACAAACTCCAACCGCTGGATAGAACATTCATGAAACCAGTTAAAGATGCCTATAACCAACGATTCGACATGTGGATGAGAGCAATCGCTGGGTCTCGGATAACTGACTACGATATTGCCGGTCTGGTTAATGAAGCGTTTACAAAAGTAGCTCGGCTGGATATTGCGGCGTCTGGGTTCAAATGCACGGGAATTCATCCATTTGACcgacatttattttctgacTTGGATTATTTGGCTGCTGACATGACCAATATTCCACTGGAAGAGCCAGGAACTTCTTCAAATAAACCAGATGTTATTGAGATGGTCCATAAATTGTCACCATTACCAGACGCTGCCAGAAAACGATCAGCGGCccaaaaagagaatgaaaagaatgctaaggaggaaaagaaaagaatgaaaactaaattcaaaatagcaAAAGAAGAGAACGGGCAACAAACCAAAGACGTGAAAGCCAAAGGAAGAAGTCAAGAAAAGGGGAAACAAGCCAAAGGGGTAAAAGCCAAAGGAAAAAGTGGAGATAAAACTAAGAAAAAGCAGCCACTGACTGAGATATTTGAAGTTCGAAAAACTACTTGCGTAGTGTGCTTAGAGGACTACGACGAAGACTGGATACGGTGCTCCAGCTGCCATGGGTGGGCTCATGAAGCATGTGCAGATATTCCTGAATGTTCAGACGCCTACATATGTGATCGATGCCagatgttttaa
- Protein Sequence
- MEEKNKKGKWYQKSLQTALDKILSKELSLKIASSHYNIPKSTLYDKISALNRGEEVTLQPKIGRFTNTFSPEYEQVLVNHVQDLSNRCMPLMKKEFLKLAFDLAELMKIPHRFNKDKGTAGKHFYYNFMRRHPDLSLRTPESTSMMRAIGFNKPQVDLYYDNLEKLFTQCKFSPSNIYNCDETGISCVHRHQNVLAPKAARQVGKLTSAERGKNITILFCMSASGHFIPPIFVFPRQRMNDRLMINAPAEIVGVAQPKGWMNCDLFLHWLQLFVKHSNPTKDKPVLLLLDGHCSHKTLAVINFCRDNNIHLISSPPHITHKLQPLDRTFMKPVKDAYNQRFDMWMRAIAGSRITDYDIAGLVNEAFTKVARLDIAASGFKCTGIHPFDRHLFSDLDYLAADMTNIPLEEPGTSSNKPDVIEMVHKLSPLPDAARKRSAAQKENEKNAKEEKKRMKTKFKIAKEENGQQTKDVKAKGRSQEKGKQAKGVKAKGKSGDKTKKKQPLTEIFEVRKTTCVVCLEDYDEDWIRCSSCHGWAHEACADIPECSDAYICDRCQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00292864; iTF_00294392;
- 90% Identity
- iTF_00292864; iTF_00294392;
- 80% Identity
- -