Basic Information

Insect: Cephus pygmeus
Gene Symbol: PRDM10
Assembly: GCA_036026175.1
Location: JAYRBY010000502.1:68098-71664[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0033 0.31 12.1 0.6 2 23 489 510 488 510 0.96

2 14 3.4e-08 3.2e-06 27.8 0.5 1 23 544 566 544 566 0.98

3 14 0.0017 0.16 13.0 1.4 1 23 574 597 574 597 0.97

4 14 0.00052 0.05 14.6 0.2 2 23 615 636 614 636 0.97

5 14 0.0035 0.33 12.0 0.1 3 23 650 670 648 670 0.95

6 14 0.011 1 10.5 3.9 1 23 687 709 687 709 0.91

7 14 0.013 1.2 10.2 2.0 2 23 718 739 717 739 0.96

8 14 0.016 1.5 9.9 0.1 1 23 746 768 746 768 0.98

9 14 0.00015 0.014 16.3 2.1 1 23 775 797 775 798 0.95

10 14 0.0018 0.17 12.9 3.9 1 23 803 825 803 825 0.98

11 14 0.00026 0.025 15.5 4.4 1 23 831 854 831 854 0.96

12 14 0.012 1.1 10.4 1.8 1 23 887 910 887 910 0.97

13 14 0.00057 0.054 14.5 1.9 1 23 932 955 932 955 0.95

14 14 0.0048 0.46 11.6 3.4 3 23 993 1014 993 1014 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0033	0.31	12.1	0.6	2	23	489	510	488	510	0.96
2	14	3.4e-08	3.2e-06	27.8	0.5	1	23	544	566	544	566	0.98
3	14	0.0017	0.16	13.0	1.4	1	23	574	597	574	597	0.97
4	14	0.00052	0.05	14.6	0.2	2	23	615	636	614	636	0.97
5	14	0.0035	0.33	12.0	0.1	3	23	650	670	648	670	0.95
6	14	0.011	1	10.5	3.9	1	23	687	709	687	709	0.91
7	14	0.013	1.2	10.2	2.0	2	23	718	739	717	739	0.96
8	14	0.016	1.5	9.9	0.1	1	23	746	768	746	768	0.98
9	14	0.00015	0.014	16.3	2.1	1	23	775	797	775	798	0.95
10	14	0.0018	0.17	12.9	3.9	1	23	803	825	803	825	0.98
11	14	0.00026	0.025	15.5	4.4	1	23	831	854	831	854	0.96
12	14	0.012	1.1	10.4	1.8	1	23	887	910	887	910	0.97
13	14	0.00057	0.054	14.5	1.9	1	23	932	955	932	955	0.95
14	14	0.0048	0.46	11.6	3.4	3	23	993	1014	993	1014	0.98

Sequence Information

Coding Sequence: ATGGATCCAAGGGGCCCTCCCGAGGGGGCCCCTGTCGACTCACCAGAGATGCCACTTATGGATAAGGCAAATGAAGTCACAGAGCCCTGGCCTACAGAGCACACAAGATCTACAGTAATGTGTGATCAGCCTAGGAAAACTAACAACAGACTTCTTTTCTTGACTGTTGAATATGTGGAGGATCAATCTCGAGATTATTCCAGAATCTTTCCAGCCTATGAACAAGTTTCCTTTTCTCCACGTGCAACATCTCCTCTCTCTGATTTTGAACATCGTGTAAGTCCACTGGACCCCAACATGAGTTCTGCAGCGAGGTACTCGCCAACTCCAGTTCAGCTACCACCATCACCTTTTCATAATTCTGTGGTTGTTCTTCAAGGCCCATCCTCACCTCTGATATCCCCTCCTGAACCAAATGttcgaaataatattaattacgcCACACCACTGGCTCATCAAACCACCACACAAAATGTACCTCAAACTGATAATTCTCCAGATTTTGTTGTGGCTGGAAGCGAGGAAGGGCTTGTTCCTGGCGTTGGgggtgaattaattttaatgcaggGGTCTACACCCGAGTTAGAGCCATCTACAGCACCACTCATGCTTGCGGAAATACCAGCAACCGATTTCACGCTGACTCGTGATTTTCTGGTGATGCACGATGACCAAATGAATGTAATGGGGCCTTTTAAGAGTCAAAACGTCGAATTGAATGAAGGACATACGAGCAATACCCCTCCTTCAATAAATAGGAACAAAGGAAATGTGACAAGACCAAGTGCAACGGTACAAAAGCGTCAATCAATGAAGGATGTGCCGGAAAAGAGTGGTCAGAAAATGGATACAGAAAAGAGGAACGTGCGAAGATCAAAGCGGCAAATAAACGATAAGAAGACATTTTGGTGCGAAGAATGTGAGAGTGTCTGTGTAAATTCTGACGGATGCACCTCACATAATGTGCGTACCATTGCTGATCAACCCGTACCCTCGCGCGCTATAGCAACACTGCCAGGATCTTATTTATCCATAAATAAGCTACCAACTCCCAATGTTCCAACGGTTGGTTATAATTACGGAGTTTTTGCAAAGCGGAACATAAGGAGGCGCACGCAATTCGGTCCTATAGAAGGAATATTGTGCGCTTACGACGGTACGCCATTCGAAAATGCTTTGCCCCTTCTTTACGAATCTGACAATGGTGAATTCCTAAAGATTGACGTTTCCAACGAGAATGCATCGAATTGGATGCGCTTTGTCAGACCTGCTCTATCATACATTGAACAGAATCTCGCAATATGTCAGCAAAGTGATGGAATAGTCTTTCTGACAACAAGAAATATCCTTCCCAAAGAGGAATTGAGAGCAGGCCCCAGTGTTGAGTACGCCGTGCGCAGAAATCTGAAGGTATTCGAGCCCGAATCGAAAGAGGAGAAGGAACTGAACAAGTCCAATGCTTGGCCCTGCTTTGAGTGCAATCAACGATTTTTAACCTCAGAAAAGTTACAGAAACATTTGAACGTGCACGACAATCCGAAGAATGAGATGAAGTCACGAAATAAGCGCAAAAAGATTCACGTGGCGTCGAataaattcgtgaaaatagtCGATGGACAGACGCTCGTGTACACCTGTCCCTACTGTCCAAAAGTCTTTCCACGAAGTTACAGTTTAAAGCGACACCTCCTAATACATCCCGGAGCCAAGGCACCACGCTACGAGTGTACTATATGTGGAGAGAATTTTCTTCATCCGTATAATCGCAGTCgacacataaaaatatttcatggtGAGAATccgaaggagaaagagaacagCCGTCAGAATTCATTTGAATGGAAGTGCTCAACGTGCACTCTGACCTTTGACAAAGCGTCCCTTCTCAATTTGCACATTCTCATTCATGCTGCCGATAATATCGAAACCGGCCATCAATCGAGCATCTGTCCCCAATGTGGttctgaatttgaaaaacGCAGCGATCTGGTAAATCATGTCTCGCAACATGGTCGACTGCAACTGCCAAAACCTACCAAGTTGACACCTCTGGCTGCATACAAGTGCACTATGTGTTATAAGCGGTTTGCTACCAAAGTGAGGTTGCAGCAGCATTGCTTGGTTCACGGGGCGGAGGATCAGAAGCCACTGCCATGCAATATCTGTCTTAAGAGATTCATGAACAATTCCGCCCTGTCCTGCCACCTCAAGACTCATCGGGAGGATAAGCAGATATTCGAGTGTCCCATGTGCCGGCAATTATTCGATCAAGTGCTCATGCTGAAGGATCATATCGAAACTCATAGGAACGCAGACGAGACTTTTAGCTGTCCACAATGCCCGCGTACTTTTACTAAATACTCAGTAATTCGCAAGCACATCAGAGCGCATCACTGCGAGCGAAAACACAAGTGTCAATTCTGCACGAAACGATTTCCTACGGTAGACAAGTTGAGAATGCACCTGCTCAGGCATTCGGATCACAGAGAATTTCATTGCGCGAATTGTGAAAAACAATTCAAAAGGAAGGACAAGTTGAAGGAGCACATGACCAGAATGCACAATTCGGAGCGGACCAGTCAGGAACAGGTGTCACAGAACAATCAGGCGAAAAAATTTGTGCCAAAGGTTAACCCGACGGACTATAATCGATTTGTGTACAAGTGTCACCAGTGCATGGTGGGCTTTAAAAGACGGGGGATGCTCGTCAATCATTTGGCCAAACGTCATCCAGATGTTCCACCAGAATCGGTACCCGAATTGAATCTACCGATTCTGCGGCAAACGCGTGATTACTATTGTCAGTATTGCGAGAAAGTTTACAAGAGCAGCAGCAAAAGAAAGGCTCACATAGTGAAGAATCATCCTGGTGCTGCTTTACCGCCGAGTAATCGGCACAAGGAAGCGGATGTTTCTGGACTGCCAAATCCTACGTTTAGCCAGACCGTCGGTAGTATCACAACGACGCCTCAAGGCTGTCAATGGTGTCACAAGCAATACGCCAGCAAGGCAAAACTTTTGCAACATCAGCGCAAGAAACATCCGACTCTCATGGAGCCGGCAGATCAGGTACCACGAGCACGAAATCGTCCATCCCAGAATCAAAACATGCCACCGGAACTTGCGGACAATAACTTTCTGATGTCTGACTACATACAGGCCTGCGATATGGACACTGATTTTCTCAAGccaaagataattaaaatctctGATGATGTCGATCTGATAGGTACCGGGCTCGACTTGGTGAGCCAGCAGttcgtgcgcatgcgcgacatACGCTGA
Protein Sequence: MDPRGPPEGAPVDSPEMPLMDKANEVTEPWPTEHTRSTVMCDQPRKTNNRLLFLTVEYVEDQSRDYSRIFPAYEQVSFSPRATSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQGPSSPLISPPEPNVRNNINYATPLAHQTTTQNVPQTDNSPDFVVAGSEEGLVPGVGGELILMQGSTPELEPSTAPLMLAEIPATDFTLTRDFLVMHDDQMNVMGPFKSQNVELNEGHTSNTPPSINRNKGNVTRPSATVQKRQSMKDVPEKSGQKMDTEKRNVRRSKRQINDKKTFWCEECESVCVNSDGCTSHNVRTIADQPVPSRAIATLPGSYLSINKLPTPNVPTVGYNYGVFAKRNIRRRTQFGPIEGILCAYDGTPFENALPLLYESDNGEFLKIDVSNENASNWMRFVRPALSYIEQNLAICQQSDGIVFLTTRNILPKEELRAGPSVEYAVRRNLKVFEPESKEEKELNKSNAWPCFECNQRFLTSEKLQKHLNVHDNPKNEMKSRNKRKKIHVASNKFVKIVDGQTLVYTCPYCPKVFPRSYSLKRHLLIHPGAKAPRYECTICGENFLHPYNRSRHIKIFHGENPKEKENSRQNSFEWKCSTCTLTFDKASLLNLHILIHAADNIETGHQSSICPQCGSEFEKRSDLVNHVSQHGRLQLPKPTKLTPLAAYKCTMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICLKRFMNNSALSCHLKTHREDKQIFECPMCRQLFDQVLMLKDHIETHRNADETFSCPQCPRTFTKYSVIRKHIRAHHCERKHKCQFCTKRFPTVDKLRMHLLRHSDHREFHCANCEKQFKRKDKLKEHMTRMHNSERTSQEQVSQNNQAKKFVPKVNPTDYNRFVYKCHQCMVGFKRRGMLVNHLAKRHPDVPPESVPELNLPILRQTRDYYCQYCEKVYKSSSKRKAHIVKNHPGAALPPSNRHKEADVSGLPNPTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHPTLMEPADQVPRARNRPSQNQNMPPELADNNFLMSDYIQACDMDTDFLKPKIIKISDDVDLIGTGLDLVSQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01199619;
90% Identity: iTF_01474151;
80% Identity: -