Cpyg008236.2
Basic Information
- Insect
- Cephus pygmeus
- Gene Symbol
- -
- Assembly
- GCA_036026175.1
- Location
- JAYRBY010000529.1:2041662-2044522[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.44 41 5.4 0.2 1 23 246 269 246 269 0.88 2 13 0.005 0.48 11.5 7.2 1 23 273 296 273 296 0.97 3 13 0.0067 0.64 11.1 0.6 3 23 306 327 306 327 0.97 4 13 0.24 23 6.2 3.7 1 23 335 358 335 358 0.96 5 13 4.8e-05 0.0046 17.9 0.3 1 23 364 386 364 386 0.96 6 13 9.6e-05 0.0091 16.9 1.5 2 23 393 414 392 414 0.96 7 13 1.5e-08 1.4e-06 28.9 1.0 1 23 419 441 419 441 0.98 8 13 0.00063 0.06 14.4 2.7 1 23 447 469 447 469 0.98 9 13 3.3e-05 0.0031 18.4 4.0 2 23 476 497 475 497 0.96 10 13 0.00048 0.046 14.7 0.5 2 23 504 525 503 525 0.96 11 13 1.9e-05 0.0018 19.2 0.2 5 23 535 554 532 554 0.93 12 13 6.3e-06 0.0006 20.6 1.3 1 23 562 584 562 584 0.97 13 13 0.00014 0.013 16.4 1.7 1 23 590 613 590 613 0.96
Sequence Information
- Coding Sequence
- ATGGATGTCACTATAGTATTAGAGGGACATAAATCTGATCAACTTAATAATATTGGCTCCAGCGATAAGCAACGGGTAAGAGTAGAGGTGAATATAggagaagatgaaaaatgcttaatacataaaaaaatgaatgagttAGAAaccaataatatattatgttcTGATGCACCCTCAAAACTGCAAAATATTGTGGATTGTATAGAGGGCTATAGAGATATAGATCCATGTCAAGTGGAATGTTTCCTATCAGACATACCTAAAGGtaaccaaaaagaaaacttaagTGAAACAAATCTAAAGAAACTGCCATGTCATTTATGCAACATGCAATGTAACTTCTGTTCAACGCACGACCTTTTGAAGCACTTGAATGAAGTTCATAATATCaacattattaatgaaaaatatatttgtacatgCAAAGAAGTCTTATATGATTTAGTACTTTACAAGGAACATATTGCTAAATGTAGAGACAACCAAAAAGTTCCAAATAACTCACATATGAAGAATATAAtcgaaaatatcaaagaagaaaacgaaCTAATCATTCACGATCGTATttacgaagaagaaaataaaggtacTAATGAATTGGATTTGATCGAAAAATCCAACTTAATAATATGTTATGTAtgctataaattatttccctGCAAAACGTATTTTACCTCTCACTTGAAACCAAAGCATCCGAATATAGTCTGTGATGAGAACTGGGATGGAATATGTTACAAATGTAAAAAGTGTGCAACTGCATATCCTAGTCTGGTTCTTGTACGTGAACACTTTTTGGAAGttcacaatataatatacagatgCTCCAAATGTCATGATATgttcaagaataaaaaattgttgaagaAGCATTATAAATACAGCCATGAAACCACCTCAGAAAAATCACAAGGTTGCAATGCATGTGgcaaagaattaaataatctaaaaGCTTTAAGGACTCACATTAAAATGAAACATGGCCGAAGTAACAGGCAAGGATTTCGCTGTCGCCTCTGTGAAGAGAAATTCCATACAAAAGAGGACAGAAAGCTTCATTATGAGAAAATCCATTGTGGAGAGAGTCCATTCATATGCATGGATTGTGGAAAGGGATTCTCTAGTAAATCAGGACTATATGGTCATCGACAACTTCACAAAAAAGACCAACAATCAACTTGCCAATAttgtggaaaaatttttaacAGGCGGGACAGCTATCACGAACATGTTCTTATCCATGTGGGTCCTCGGCATCGCTGTCCCTACTGTCCAAAAGAATTTGTGCAGCGTAGCAATCTCATACGTCATATACGAATTCACACAGGACAGAAACCGTATTCCTGCACCTTTTGCGAGAAACGCTTCTCCGACAAGGGTGCTTGTAATTCGCATATTCGGGTTCATACGAAGGAGGAGCAATGTGCCTGTTCATATTGTGGTCAAGTTTTCACTAAGAAACAAAAGTTGAAATATCATATTCGCAAACATACCGGGGAAGGTTTATTGAGTTGTGAGATTTGTGCaaaaacttttacaaataCTTTTGCCTTGAAGGAGCACAGAACTATTCATGATAGGCAAACACAAATGATGTGTATAGAATGTGGAAGAGCGTTTAGTAATCAAAAGTACCTAGAAAGGCACATGGCTACTGTACATCCTGGTCCTgaatctttatcttttatctgTCCAATCTGTGATAAAGTTTTTCACCAACAGTCCAGACTGAAATACCACATCGTAACGCATActgagaagaaatattttgattgtgAACTCTGTGGGAAACGCTATAGCACCAGAAAGTCTATGCTAAATCATTTACAACGGTATCATGATCTCCAGAGTAATGGAGTGGAATATAAGAGTGCTAAAACTAATATGCTCAAAGAAGTGGAATTGAAGACTACAGCAGGTGTTGATTGGATATCAAAAATAGATGGATTAGTTGCTGAAAAGCTACTTAATGGAAAGTGTGAGCAAGATGAAATTGGAACGACAGACgatggtaaaaatataaattttgcacGCGGCTCTTATGATGAACGACTGAACGACATAGGGCCGCTCGCGGACAAAGAATCCTTtccaaagaaagaagataaaagttTACTTGATGTCAACTCCGTACTGAATGGATGGATGAATGCAATCTATAAACAAAATCTTTCATTGGTGTCCACCGGGAAAATCAATGGAGCGGAAAACCATTGCCAAAATAATTACGACAAAGCCTTAAATTTAGTCAAATGTACCGCACAATCTACGAGTAGTAATGAAGATTTAGAAAGTAGTACTTCTAAAGTACTCATAACTCAAGGCCAGTATTCACGAAACGAACAATCCATATCTGataatcagaaaataattaatgacgGAGCGCTAACTTTGTTATGTGAAAgaggtaaaataaatgaagttaACGTTAAATCTACCGGTTCAAACGAAACAGTGAACTATATCGAAAAGTTAAACTCATCAAAAGTAATGTATAAtcgtagaaaatatttgacaaaacCGAAAAAGTACGTTCCTTCCATTAATGTTGATCGTGCGGAAAAGCATGAATTAAAGAgtgaatttgagaaaaacagGATAGATGCGTCTAATGTTTCATTCgaatga
- Protein Sequence
- MDVTIVLEGHKSDQLNNIGSSDKQRVRVEVNIGEDEKCLIHKKMNELETNNILCSDAPSKLQNIVDCIEGYRDIDPCQVECFLSDIPKGNQKENLSETNLKKLPCHLCNMQCNFCSTHDLLKHLNEVHNINIINEKYICTCKEVLYDLVLYKEHIAKCRDNQKVPNNSHMKNIIENIKEENELIIHDRIYEEENKGTNELDLIEKSNLIICYVCYKLFPCKTYFTSHLKPKHPNIVCDENWDGICYKCKKCATAYPSLVLVREHFLEVHNIIYRCSKCHDMFKNKKLLKKHYKYSHETTSEKSQGCNACGKELNNLKALRTHIKMKHGRSNRQGFRCRLCEEKFHTKEDRKLHYEKIHCGESPFICMDCGKGFSSKSGLYGHRQLHKKDQQSTCQYCGKIFNRRDSYHEHVLIHVGPRHRCPYCPKEFVQRSNLIRHIRIHTGQKPYSCTFCEKRFSDKGACNSHIRVHTKEEQCACSYCGQVFTKKQKLKYHIRKHTGEGLLSCEICAKTFTNTFALKEHRTIHDRQTQMMCIECGRAFSNQKYLERHMATVHPGPESLSFICPICDKVFHQQSRLKYHIVTHTEKKYFDCELCGKRYSTRKSMLNHLQRYHDLQSNGVEYKSAKTNMLKEVELKTTAGVDWISKIDGLVAEKLLNGKCEQDEIGTTDDGKNINFARGSYDERLNDIGPLADKESFPKKEDKSLLDVNSVLNGWMNAIYKQNLSLVSTGKINGAENHCQNNYDKALNLVKCTAQSTSSNEDLESSTSKVLITQGQYSRNEQSISDNQKIINDGALTLLCERGKINEVNVKSTGSNETVNYIEKLNSSKVMYNRRKYLTKPKKYVPSINVDRAEKHELKSEFEKNRIDASNVSFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473368;
- 90% Identity
- iTF_01473368;
- 80% Identity
- -