Basic Information

Insect: Cephus pygmeus
Gene Symbol: -
Assembly: GCA_036026175.1
Location: JAYRBY010000466.1:117063-118750[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.1e-05 0.002 19.0 1.6 1 23 243 265 243 265 0.98

2 9 4.1e-08 3.9e-06 27.5 0.6 1 23 271 293 271 293 0.99

3 9 9.7e-05 0.0092 16.9 1.6 1 23 298 321 298 321 0.97

4 9 0.00064 0.061 14.3 1.7 1 23 327 349 327 349 0.97

5 9 1e-05 0.00098 20.0 0.2 1 23 355 378 355 378 0.97

6 9 1e-06 9.4e-05 23.2 0.9 1 23 388 410 388 410 0.96

7 9 9.3e-05 0.0088 17.0 3.5 1 23 414 436 414 436 0.95

8 9 6.3e-06 0.0006 20.6 0.5 1 23 442 464 442 464 0.99

9 9 4.7e-07 4.4e-05 24.2 0.9 1 23 470 492 470 492 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.1e-05	0.002	19.0	1.6	1	23	243	265	243	265	0.98
2	9	4.1e-08	3.9e-06	27.5	0.6	1	23	271	293	271	293	0.99
3	9	9.7e-05	0.0092	16.9	1.6	1	23	298	321	298	321	0.97
4	9	0.00064	0.061	14.3	1.7	1	23	327	349	327	349	0.97
5	9	1e-05	0.00098	20.0	0.2	1	23	355	378	355	378	0.97
6	9	1e-06	9.4e-05	23.2	0.9	1	23	388	410	388	410	0.96
7	9	9.3e-05	0.0088	17.0	3.5	1	23	414	436	414	436	0.95
8	9	6.3e-06	0.0006	20.6	0.5	1	23	442	464	442	464	0.99
9	9	4.7e-07	4.4e-05	24.2	0.9	1	23	470	492	470	492	0.99

Sequence Information

Coding Sequence: ATGTGTCCCGCGTTGAGCGTTAAGGAAGATATTGCGAGGTTGCAAGGACACGAACAACGTGCCAGAAGAAGCGTCCTGCGCGGCACCGAGGGCTACTCTGTTCGCGACGCGTTTACGGACTCCATGAAAACTCACTCTTGTCCTTGCAGAGACCGGCATCCTGATCCAAGCGCGTCCTCGCACTTGTCGTCAGAGAGTAAGGAGTCTCTTGTTCTCGAGGACGACGCTACGAGTGGAAGCCACGCAGTCACCAAATCCATTGACGCAACCAGCATCACCAGTACCTGCCTCACTGCTACAAGTACTGTCAGTAACTCTCTCACCATCCTCGCTATTGCCCATACCGGCCAATCTCaagaaaacttaattttacGGGGACTTGTGAAACAGGAGGAGGATCTCGATGCGGATGAAGATCAGAGTGAGGGTGATGATGACGATCAGATGGAGGGGGAGAGGGTTAAAACGAGAAAAGTGGGcaaggaggaggaggcggaagaggagggagaggaggaggaggaggaagatgacgacgtcgacgacgacaacgacgacgacgacgatgagggtgacgacaatagtgatgatgatggtgaggaggagcaggagcagcaggagaaagaggaggaggaggaggaggaggaggaacaTGCcgatgaatttgaaaatttggagtCGCCGCAGAGAcaaaaaaggaggaaatatcgaaaaaaagaatcagtCAAGTACGAGTGCGAGATATGCAAGGTAGAGTTCAGCCGGCACGGTGATTACAGGCGACACATGGTGAAACATAGTGATCTTAGGCCATACAAGTGTTCCGTATGTGGAAAAGCATTCAAGCGCTCCTCGGAGGTGACCAGTCACATGCAGATTCATCAGGGGATCAAGTACACTTGTGATATATGTAACTTCACCACAACGAACAAAGTCTCTTTGCGCACCCACAATCGTCGGGTTCACCAGAAGGACTTCCGTTATCATTGCGAGCAGTGCACCAAAGGATTCATGTCAAATTATGATCTCGAAGACCACAAAGCCAGTCACCTTGGTACGAAAACCTTCATCTGCGAGTACTGTGGTAACGCTTACTCCCAGAAGTCTTACTTGGTCGCCCATAAGAGAGTCATTCACGGGATACAGAAGAGTGCCCCCAAGGAATATCAGTGCCAGACCTGCAACAAGAGCTTTGCCTCCGagtacaatttgaaaaatcacattGGTCTGCActctcaaaaatttctttgcgCTCATTGCGGCAAGGAGTTTGCAACGAATCACGCTCTGAAGCTTCACAATCGCAAGCACACGGGCGAGCGACCCTATCAGTGCAAGTCTTGCTCGAAGGCTTTCGCTCGATCCGCGGCTCTTCGTGTTCATAAGCTCACTCACACCGGAGAGCGACCCTACGTTTGTGACCTTTGCGGTCAGAGCTTCACGCAGCGCAGCAGCATGATGGCTCATCGAAGAAAGCATCCTGGCATTCATCCACCGCCGCCGCCCTTGCTTCTCAGCAGACTGGAGAACAATGTCAAGTCTGAATGA
Protein Sequence: MCPALSVKEDIARLQGHEQRARRSVLRGTEGYSVRDAFTDSMKTHSCPCRDRHPDPSASSHLSSESKESLVLEDDATSGSHAVTKSIDATSITSTCLTATSTVSNSLTILAIAHTGQSQENLILRGLVKQEEDLDADEDQSEGDDDDQMEGERVKTRKVGKEEEAEEEGEEEEEEDDDVDDDNDDDDDEGDDNSDDDGEEEQEQQEKEEEEEEEEEHADEFENLESPQRQKRRKYRKKESVKYECEICKVEFSRHGDYRRHMVKHSDLRPYKCSVCGKAFKRSSEVTSHMQIHQGIKYTCDICNFTTTNKVSLRTHNRRVHQKDFRYHCEQCTKGFMSNYDLEDHKASHLGTKTFICEYCGNAYSQKSYLVAHKRVIHGIQKSAPKEYQCQTCNKSFASEYNLKNHIGLHSQKFLCAHCGKEFATNHALKLHNRKHTGERPYQCKSCSKAFARSAALRVHKLTHTGERPYVCDLCGQSFTQRSSMMAHRRKHPGIHPPPPPLLLSRLENNVKSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00297744;
90% Identity: iTF_00293909;
80% Identity: -