Cpyg003876.1
Basic Information
- Insect
- Cephus pygmeus
- Gene Symbol
- -
- Assembly
- GCA_036026175.1
- Location
- JAYRBY010000398.1:347-2851[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-09 1.5e-05 25.1 0.1 6 38 60 91 55 97 0.89 2 2 5 8.1e+03 -2.8 0.0 16 23 176 184 171 185 0.74
Sequence Information
- Coding Sequence
- ATGGCAGCGACTAGAAAGAAtcgagagaagagaaaaaaaagtgaattaaaaaaagtcaatttgaAGAATAATGCAAAGTGTTCGAAAATTACAAGGAAGACTCATGTATTAGTTAATCGTTCAAGAAAAACTAAACAGAACAAAGTTAAAAGGAAGAATTATTCTTCTGAAAGTGTTGAGAATGCTTTAAAAGCTTTAGATACCGGCATCTCTATTAGAAAAGCTGCTGCTGCGTATGGAATTCCAGTAGCCACACTTGCGAGGAGGAAAAATCATCCTGTTGaattcaaaacaaaaccagGACCCGATACAGTTTTATCAAAAGCTATTGAGCAAGATATTGTTAATTGGATTCTCTACAAAGCTGAACGAGGCCAGccagttaataaaaatgaacttcTTGATTCTGTGCAGttttatgtgaaaatgaaGGGGATAGCCACACCGTTTCTTCACAACCGTCCTGGGCGACATTGGTTTGAAGGGTTTAAGAAACGTCATTCTAACATAAGTATCAGAAAACCACAGCATCTGAGCGTCAGCAGAGCAAGTGTTACTCGAGAAGATTTGCAAGAGTGGTTTGAtgagcaagaaaaatatttaaaaaagaataatttattgcacATTTGTCCTAgcagaatttttaattgcgaTGAATCAAGTATCTTAATATGTCCAGATTCAGATAAAGTATTGACTACAAAAGATACTCGTGCAGTTTATAAAGTAGCAGATGGGGGAAAGGAATGTCTCACTGTTCTATTTATGTATAGTGCAGATGGCACTCGTGCTCCACCAATGTTAATGTTCGCCTACAAAGAAGGAGTTCCAAAGAACATTGCTGAGAAAACACCAAGAAACTGGGACATCGTTTTGAAAATGGCTATGCACAATATgctaaaagagaaagaagctaTTGTTAGTGGATTTAGAGCATCTGGATTAGCACCGTTTAATCCTAGTGCTGTCGACtatgatatttttcagaagagaaagaagaatttaaatttggtACAAGAGCAACAAGATTTAGGTAATCTACCAGAGGATAGTACACAACATCtgcgaaaatttgaaaacaatctTTCAGCTGAACTGCTTCAAGAATTCAAAGATGCTTCGTTGACTGGTCAATGGACTGGAGATGTAGAAAAGAAGGCATTATATGAGTACTGGTTTCAGATCAGAGATACGTCTACGGTACGACAAGAGTCTGAGAACGAAAATTTTCCTTCGAATGATAGTTTGGTTAATGAAAACGATTTACAAATAGTTACGCAAGAAGTTTCTGCTAATCGCAACGAGTCGTTGATTGAAGTTGTTCTTATAAACAATACTTCGgaacttgaagaaaatattctattgGAATCCtcagatataaatattgaatttcaactAGATGAGCATATTATGTCAAATAATCAAACAGAAAGTAACCTAGGTTCTCGTCTTACAACTACCGATTTTGAAGAAGTTTGTAATTCCAGTAGTGAAGGCAATATCGAAGTGAACaaggagaataataatatgataGCTAATAAAGGAGCTGATATAAATCCCGATGAATGTTTTGCGAAGGCATTTACTCTGCCAATAGaatatttaccaaaaaaaaagaagatgaaagtGGAAGGTTCTGGTAAACCAAAATTACCCGCAGCAGGAACAGCTGATGAATGGTGGAAAtacaatatagaaaaagaaagaaaaaaggaacaaagagaACAAAAACTTACCAAGAAGAAGCAACTTcaagacgaaaaaaagaaattagcaGAGGAAAAGAAGATCTTAGcacaaaaaatgaaagaaatagcACAAACAATCAAACGAGAAaccaaataa
- Protein Sequence
- MAATRKNREKRKKSELKKVNLKNNAKCSKITRKTHVLVNRSRKTKQNKVKRKNYSSESVENALKALDTGISIRKAAAAYGIPVATLARRKNHPVEFKTKPGPDTVLSKAIEQDIVNWILYKAERGQPVNKNELLDSVQFYVKMKGIATPFLHNRPGRHWFEGFKKRHSNISIRKPQHLSVSRASVTREDLQEWFDEQEKYLKKNNLLHICPSRIFNCDESSILICPDSDKVLTTKDTRAVYKVADGGKECLTVLFMYSADGTRAPPMLMFAYKEGVPKNIAEKTPRNWDIVLKMAMHNMLKEKEAIVSGFRASGLAPFNPSAVDYDIFQKRKKNLNLVQEQQDLGNLPEDSTQHLRKFENNLSAELLQEFKDASLTGQWTGDVEKKALYEYWFQIRDTSTVRQESENENFPSNDSLVNENDLQIVTQEVSANRNESLIEVVLINNTSELEENILLESSDINIEFQLDEHIMSNNQTESNLGSRLTTTDFEEVCNSSSEGNIEVNKENNNMIANKGADINPDECFAKAFTLPIEYLPKKKKMKVEGSGKPKLPAAGTADEWWKYNIEKERKKEQREQKLTKKKQLQDEKKKLAEEKKILAQKMKEIAQTIKRETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -