Cpul006492.1
Basic Information
- Insect
- Cephus pulcher
- Gene Symbol
- -
- Assembly
- GCA_030142455.1
- Location
- JARQTB010000471.1:97328-99208[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0043 0.34 11.6 0.6 1 23 85 107 85 107 0.96 2 12 0.00023 0.019 15.6 1.7 1 23 279 301 279 301 0.99 3 12 0.021 1.7 9.5 0.7 2 23 315 337 314 337 0.94 4 12 0.001 0.079 13.6 7.0 2 23 344 365 343 365 0.97 5 12 0.00061 0.049 14.3 1.9 1 23 374 397 374 397 0.98 6 12 0.029 2.3 9.0 2.1 1 23 412 435 412 435 0.94 7 12 1.6e-06 0.00013 22.4 1.3 1 23 441 464 441 464 0.96 8 12 0.015 1.2 9.9 0.8 3 23 471 492 469 492 0.94 9 12 0.0016 0.13 13.0 0.2 1 23 497 520 497 520 0.97 10 12 2.2e-08 1.7e-06 28.3 0.4 2 23 527 548 526 548 0.97 11 12 6.6e-07 5.2e-05 23.7 0.4 1 23 554 576 554 576 0.97 12 12 4.6e-07 3.6e-05 24.1 0.1 1 23 582 604 582 604 0.98
Sequence Information
- Coding Sequence
- ATGAGACTGTGGCAGCTGTCTGACTCCCATGGGAATCTCCGTTATTCGCTCGTACCGGCATCGGATGACTCTTCGGGAAGGGCCAGCAGACAGCAGGAGCTCATAGTGTCTAGCAACATCAAGGTCGAGGTGGCCGAAGAGTTTGTTGGAGTTGGTGGGACGGCAGGAAAGGCTGAGCAGGCGGAACTCTCTAGCGAGGAGAGTCGTTACTTGGGCTCGCTTGCTCATCTTTGCGAAGTGGCCATCGAGTGCTTCTCTTGCGACACGTGCACTATGAAGTTTCCCGTAGAGAGTATGTTGCTCAGACATAAGGTTCGCCATAGACGAAATTTTCGAACAAGACGACTGTACGTGcggaataagaaaatttctttgaccCAAAATTTACGGGGCAGTTCCAGCGAGGCTCGTTCGCCAAACGATCCCATCTACATGTGTCGGCTCTGCAGCTTCCGCTGCGACAGGCGAGTCATCCTGAGCTCACACGTCGCAGCGAAGCACTCCTCCGCTCGGCTGGAGAAGGAAGTGCCGGCTTCTCGTACCTGCTCCGACTGGGAATCAAAGACCACGAAGACAACCGACAGACGGCAGATTTCTAAGCGGGTGGTTTTGGTAcgggggaaaaagaaaggggaaaCGCGCCAAGTACCGGAAGAGAAGACCAAGTGTTGCGGCGACAGTGTCAATGTTGACGATAACGATGAGAACGATGCACAGAGTGTAGACGGTAGTACGGaagaagggagagagggagcCGAGGAGAAAGACGAAGACAAAGTTGAAAGGGAAGACGATGGCGATAGTAAGAAGGGACTGAAGCAGGCTGAGAGGAATTACCGTTGCGACGTGTGCTCGTTCGAAACCAGCcgaaatgataaatatcaGAAACACTTGAGGATACACAAGCGACGGCACCGATCGAGTCCCCGAGGGATGATTTTATCGTGTGCCCGCTGCGATTTTCGGTGCAAGAACGCCCCCAATCTGGATGCCCACATCGCCCGAAAGCACGACGCCAACGAGCAGTGCCAATGCAACATTTGCGACTTCAAGTGCGCGAAGAAGAGCACTTTGTACTCGCACATGAGGAGGCATCGGATCCAGGAGCTCGGAAACATGTACTCGTGCAATGAGTGCGGCTTCAAGACCGGGAACAAGACCAGCCTCTATTCGCACATTAAGCGGAAACACAAGTCGGCTCGTTCGGCGTCAGGCGGCAAGGCGcccgaatttttcttttgcaatcAGTGCGACTACAAGAACAAAAACAAGTACGAACTGAAGGTTCACGTTGCACGCAAGCACACCGACGACTTCAAGTTTTCGTGCGAAACGTGTGGCAAAAAGTTCAAGGTAAAGGGAGATCTAACCAATCACATTAGGTTCACCCACAAGGAGCAACCTGTAATCTGTGATGTTTGCGGCAAGACCTGCCTCAACAGCAACTCCTTGTATGTACATCAGAAATTCGCCCACTACAAGGCCAAGTACGAGTGTGGCATCTGCAAGCGACGCATGGTGAGTCAAGAGAATCTGGACGAGCACATGCTGCGTCAACACGAGAAGCGAGAAAACGTCGTGTGCGAGGAGTGCGGCAAGACTTTTTCGCGGAACAGTCGGCTAAAGGTGCACATGAGGATTCATACTGGCGACAAGCCCTACGCCTGCACGATCTGCAACAAGTCCTTTGCTCGGCGCACTGCCCTTAAGCAGCACCTACTCATACACACGGGAGTGAGACCTTACGTGTGCGACATTTGCGGCAAGGCCTTTACGCAAAAACCCGGACTCATCAGCCACCGGAAGTCTCATCCTGGATCTCATCCGCCACTTCCGAGGGTTCTAATAGACCACATTCTCAATGACGTCATGAACAATTAA
- Protein Sequence
- MRLWQLSDSHGNLRYSLVPASDDSSGRASRQQELIVSSNIKVEVAEEFVGVGGTAGKAEQAELSSEESRYLGSLAHLCEVAIECFSCDTCTMKFPVESMLLRHKVRHRRNFRTRRLYVRNKKISLTQNLRGSSSEARSPNDPIYMCRLCSFRCDRRVILSSHVAAKHSSARLEKEVPASRTCSDWESKTTKTTDRRQISKRVVLVRGKKKGETRQVPEEKTKCCGDSVNVDDNDENDAQSVDGSTEEGREGAEEKDEDKVEREDDGDSKKGLKQAERNYRCDVCSFETSRNDKYQKHLRIHKRRHRSSPRGMILSCARCDFRCKNAPNLDAHIARKHDANEQCQCNICDFKCAKKSTLYSHMRRHRIQELGNMYSCNECGFKTGNKTSLYSHIKRKHKSARSASGGKAPEFFFCNQCDYKNKNKYELKVHVARKHTDDFKFSCETCGKKFKVKGDLTNHIRFTHKEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECGICKRRMVSQENLDEHMLRQHEKRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYACTICNKSFARRTALKQHLLIHTGVRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473369;
- 90% Identity
- iTF_01475649; iTF_01474889; iTF_00298514; iTF_00296217; iTF_00297758; iTF_00293919; iTF_00291734; iTF_00296996; iTF_01473369;
- 80% Identity
- -