Cpar012079.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cephus parvus
Gene Symbol
-
Assembly
GCA_030142435.1
Location
JARQTA010000798.1:201105-205227[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 1.8e-05 0.0015 19.2 0.5 3 23 23 43 22 43 0.96
2 4 0.095 7.8 7.5 0.3 2 21 403 422 402 426 0.88
3 4 7.3e-06 0.0006 20.5 0.2 2 23 900 921 899 921 0.97
4 4 0.0058 0.48 11.3 0.3 1 23 929 952 929 952 0.97

Sequence Information

Coding Sequence
atgaatatCAGCCTCTatGCACAAAACTGTCGGAGTGCGCCAATAGACGATCCGCCAGTAGCGTTTTGTGAGATTTGTGGTCAACAATTCTCAACCAAAAAAGATCTACGGTCACATATCCTTGCTCACTTAGGACAACCTCGAGTGGTCCTCAAACGAATTTCCAACCTGAAACccacaaagaaaaaacataacGATACGTATCGCTTGGATCCAGAAAAAAAGGGTTCTTTGAAATTGACTTTGAAGAAACAGACCAGTACCGACTCTTTAAAGCtcactttgaaaaaatcatctAAATCAAAGGACTTCACTGTTGTTAATTCCAATTTTGATttcaatacaaatatttattgtaagcAAGAACTGGCAGATACAACGAAGAATGAACAGACTGATGTTAAGGAAACAAAGGAAGGAATCGAAGAGACATTCGAGAATGTGATAGAGAGTCATGAGgaaaatgaagaaaatacaGATTTTAAAACGAACGAGCCTGATGAGTCTTTGGACGAACATGAAAGACCCTCAGTGGATACTAACGAGGGTGACTCTGGTGTAGGGAGTGATACTGTAAATCCTCAAGAACGAGAGGATCAAAATGTGGATGAATTATCAGCTTTGGATTATTTCGACAATACAGAAAAAAGACTGACTGATAATGAAGATCCAGAAGAATCATCTGATGCTATAGAAGCAACTTGTAGAgaaactattgaaaatttaaaaaaacttggAGAACAATCCAAtTCCCGAACGTCTAGCCCAACATCAAACGAAACATCAGttgaaaaagaacaagaagtGGAGGAGGATATTGATAATCCATCAAACATGGTCCAACAGCTTGAAGACAATTCAGCCATTAACATAGTTTCAAAATCGCCAGTAATTCCTATGCAATCGCCAAACCATACTTCACCTTCTGATATGGAAAAGCAGACATCAGTTTTACCGGAGGCCAAATccaattttaataacaatcagCTGCCCAGTGATCTGTCGTGTAAGgataatgaaaacaataacaaagGAAGTGATCAAACAGTCATAAATGTAGCCGATAGCAATGCTGACTCTACCGGatcgattttgcaaaatttcctTATTGAGCATCAGAGAAGAAGTGAGAATGAAGCATCGTTAAGCGGTAGTCCACCATCAGATGAAACTGAATACGTTTCTTTAGAGAAACTGGCAGAGACAACATGTCGTGTTTGCAATGAAAAGTTTAAGGATATTGCACAATTGGATGAGCACAAAGCCAAAGCGAGTCACTATCAATGCAGTATACCAGATTGCATAAATTTAGTGTTCAGTTCATCTCTGGAAGTTGCTCTGCACAAAGCTCAAGTTCATGGAGCGCCATTATCACCTAATATCAGTCAACTTTCACCACATTTAAATCCGAACTCGCCtcatttaaatacaaattcaccCCATGCTGTCTCGATGGAGTCGACACACGTTTCTAGCACATCACAGCACAGCAGAAACTCCCCATTGACATCATCGCATCAGACCAGTTCCCCGACGTATGCTAATATACCAAACACCACGCAACAGATGCTGCCACCAGTAAATTTTGAACAGCTTCCGGCTCCTGTGCAACAATTAGCTCAGCAAGTGCAGCGAATGCCATTGCCGCAACCTCAGTTACCGCCAAGTCTCCCTCCTGGAGTAAATACAATGATTCCTGGGGCAAATTACTTTGCGCAACCCGCAGGAAGGCCGCCAATGTACAGGGTTACTGTACCACAAGGGATGCACTATCCTACACAACTAGCTCATCTGTATTCACAATACGGTGCAGCACCATATCCACAAATGGCAGCACCACCGCAGTTACATCCACCAATGCCTCGAAACAGATATTCTTCAGTCATGCAGGGTACAAGAGCACCTAGGATGTCACAACCAGGTGCGGCTCCACGGCAGCAACGCATGAAAAGGCCAATTCATCAGACGTTGTCACCACAGACACAAAACAATCTCTCCGCGATGAAACAAAGGCGAATGGACGTTTTGTTACCTGACAGAAATGAAGATGCTGACTGTCACGTGATAGCTCAACAGAAGAGAAACGACGGGCTACCCGTGATACAAAATGTGCAAGGAGCAGCAACACAACAGCCATCAAACAGAGCCGACTCCACGATACATCTGACGGACTCTATTACTCTCAGTGTACGACAACCTGGTTCCGCCTCAGCGCAATCACAGAATTCCTCCGCTGCTGGTGCAAAGAAACCAAACGCGGAAGCTGTAGCGAATGTATTGGCTGCGCGCGGTATTACGGTTACACCTGCTGCGAATAAGAACAAAGCGAGTGAACAGAAcaaacagcagcagcagcagcagcagcagcagcagcagcagcaacagcagcaacaacaacggACGGCACCAGTACAGCCTGCCGTAAATGTTACGGCGATAAATTTGAACTCTGCTATTTCGATCATACCTGCAAGTTCGCAAAGAAAggaacagcagcagcagcaacagcagcaacaacaacagcagcatcaacaacaacaacaacaggcTCAATTTGCGGTACCGCAAAATAGACAGAGTAAGCAATCAGCTAGCGACGTTGAACGACCGCCAAGACCTCCTACGGTGGATCTGACTCAGGATGGTCCACCTCCACTGGTAGCAACTAAGCGAGGGCGACCTTCATTaaatgtGTTGACTTGTCCAATCTGTGAGAAGAGCTTTCAGAATCAAGGGATGCTGACTCTACATATGGGCACGCATCGAACATCGAACAAATTGAATCACAAgtgTAATTTGTGCCCCGCACAATATCCTAGTGCGCAGGCCCTGATCGCGCACAAGCAAACCTATCACAAGGAAGTCGACGCTACATTACAGAGTGGTGGTACAGAATTAGCACTACCTGTCGTAGATTTAAAATCACCACAAATTCTAAACCGACTCTCAAATCTCGGTATACAGAGTTACATACCGTTGTCACAACTTAGTGCCCAAACAGGTGGTTATTACGGTTTACCGATAGTAACAATCGACGGTGCACGAAATCCTAATATCTGTAACTTAGGTGCCCTCGGTGCTACATCGATACTGAGCTTAGGTCCCCTTAAACACCTCTCAAATAGATAA
Protein Sequence
MNISLYAQNCRSAPIDDPPVAFCEICGQQFSTKKDLRSHILAHLGQPRVVLKRISNLKPTKKKHNDTYRLDPEKKGSLKLTLKKQTSTDSLKLTLKKSSKSKDFTVVNSNFDFNTNIYCKQELADTTKNEQTDVKETKEGIEETFENVIESHEENEENTDFKTNEPDESLDEHERPSVDTNEGDSGVGSDTVNPQEREDQNVDELSALDYFDNTEKRLTDNEDPEESSDAIEATCRETIENLKKLGEQSNSRTSSPTSNETSVEKEQEVEEDIDNPSNMVQQLEDNSAINIVSKSPVIPMQSPNHTSPSDMEKQTSVLPEAKSNFNNNQLPSDLSCKDNENNNKGSDQTVINVADSNADSTGSILQNFLIEHQRRSENEASLSGSPPSDETEYVSLEKLAETTCRVCNEKFKDIAQLDEHKAKASHYQCSIPDCINLVFSSSLEVALHKAQVHGAPLSPNISQLSPHLNPNSPHLNTNSPHAVSMESTHVSSTSQHSRNSPLTSSHQTSSPTYANIPNTTQQMLPPVNFEQLPAPVQQLAQQVQRMPLPQPQLPPSLPPGVNTMIPGANYFAQPAGRPPMYRVTVPQGMHYPTQLAHLYSQYGAAPYPQMAAPPQLHPPMPRNRYSSVMQGTRAPRMSQPGAAPRQQRMKRPIHQTLSPQTQNNLSAMKQRRMDVLLPDRNEDADCHVIAQQKRNDGLPVIQNVQGAATQQPSNRADSTIHLTDSITLSVRQPGSASAQSQNSSAAGAKKPNAEAVANVLAARGITVTPAANKNKASEQNKQQQQQQQQQQQQQQQQQQRTAPVQPAVNVTAINLNSAISIIPASSQRKEQQQQQQQQQQQQHQQQQQQAQFAVPQNRQSKQSASDVERPPRPPTVDLTQDGPPPLVATKRGRPSLNVLTCPICEKSFQNQGMLTLHMGTHRTSNKLNHKCNLCPAQYPSAQALIAHKQTYHKEVDATLQSGGTELALPVVDLKSPQILNRLSNLGIQSYIPLSQLSAQTGGYYGLPIVTIDGARNPNICNLGALGATSILSLGPLKHLSNR