Cpar005189.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cephus parvus
Gene Symbol
-
Assembly
GCA_030142435.1
Location
JARQTA010000450.1:3158054-3161347[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.029 2.4 9.1 1.9 1 23 434 456 434 456 0.97
2 8 0.12 9.6 7.2 1.9 3 23 469 490 469 490 0.96
3 8 6.6e-05 0.0054 17.5 0.6 3 23 531 551 531 551 0.99
4 8 0.0002 0.016 15.9 1.8 3 23 559 579 557 579 0.95
5 8 3.5e-06 0.00029 21.5 1.0 1 23 587 609 587 609 0.98
6 8 0.0001 0.0083 16.9 1.9 1 23 641 663 641 663 0.99
7 8 0.14 11 7.0 2.3 2 23 673 695 672 695 0.93
8 8 0.088 7.2 7.6 0.2 1 19 706 724 706 727 0.93

Sequence Information

Coding Sequence
ATGTGCCTACGTCGAATAAATGCCACCaacgaattctttaatactattatttcgtcagataaattattcaataaaatcttaAGAAAGaAACAGAGTAAGCATTCATCTTTATCGGACACTCATAAAGATATAGAGTATGACAGATCAAAGAAACATACTGGATCTAATGAGCAAAAGGAAAGAAATCCATTTTTGATCACAGTAGAAACATCTGGTTCCATGAAGGAAACTAACTCTGGAGTTATCATGAAATCAGCAAACGTAGATGCAGAGTATCAGTATattgaatatagaaaatgCAATTCAAAAGataatactgaaaaaattggtagaactattgaaaataacaaattattgagTGATATACATGGCAAATTTACAAAGAATGCAGTAGATTCTTCAGTGAAAGATggtataacaaaaattgatgatttGTCAGTAGTTGCCATAGAGTCAAAGATAAATGATGattctttatatatagaaaatgatAATGTACATGATACTGAACACAGAAGTACATCAATATCTGACAGTCAGcatattatacaaaatgagAACTTAGATAGCTCTGGGAATGAATTAACAATGGTTCCTAAGACGAGTGCTGTTTTAATTTCTATGAAGAACAATGTCGCAACTTGTAATGGACATTGGCAATCGTTGTCAAATGatatattacaaaagaaagatTATCGATGCAATGtaataagtaaaaatgaatCTGTAATTGTATCAACAGAAGCTGCCACTACTGTAGTACATAAATCACTCAACAACCAGAATGTATATAATGACTTTGTAAAACAACAGCCACTAATATGCAATGATAATAGCAGCGTAATGCTGAAAGGAAGTAGTAATGTAGTAATAGGCCTCGCAAACAATGTAATTGCGAAAAATTCAGCAAAAATACCCTTAGAAGTTCTGCGATGTCCTGATTGCGAAGAAAGTGTCAAGATTTTCTCACTGGAGGAACGGCGACTGTTTTTTGCTTACTTAAAGCAACATTCGtgcaataaaatgaaaaatcaagaaaactcgacaagtaaatataaaagcaaCCAGGTTGTTGACTCCTTCTCCGAGTACAAGGAGAGATATcagacgaaaaaaagaaaaaggaaggaaaccCAAGAAGTAGGAGATTTAGGAAAATCATCATCGAGGTCATGGCCGGACGGTGATCTTCCTGCTGACCCTGGACCAGATCCTGCACCACAAGAGGACATCTTTGAAGACGACGTTAGATTGGATGATGACTTTCATTGGCCAATGCCAAAACGAAATCGTCGATTGCATCGATGCCCCTCTTGTGATTTTATCACAAAAAGTGCAGTTAGATTAAAATCTCATCAAAAACTACATCGCATGGATAAGagacaaaatatttactaCACAGGCTGTCGACattgttataaacaatttgAAACAAGTGTTGAAGCAAGAAAGCATGAAAGACTAGTACATATTTCCAATGGTGCAAAAAATAGTTTGTGTGAATACTGTGGACTTATGAAACCACAGAAGACACTGCGAGATCATATCTTGAAGCAGCACACAGTGGAGTCCGAAATAGAGATGCAAGGGTGTAACGTCTGTGGAAAAATGTTTATTTCACCAACGAGCTTATATTTGCATAAGAAAACACATTCTATAGAGAGGCAACATTTGTGTGATCTGTGTGGCAAGGCATTCAAACAACGTATGGCTATGCGTCGTCATTACATGCTGCACTTTCCACGTACACCGCCTAAATTCACTTGTAACGTATGCGACAAAAGAGTAACTACAAGAGGATCTCTACGTCTGCACATGATGCGACACACCGGTGAAAAGCCTCAAAAATGTCCAGAGTGTCACATGGTTATGCGTCATGGCCTAAAACATCACATGCGTTTGCATTCCGATGATGCACCCTTTAAATGCGTTGTGTGCAGTGCTGATTTCAAGCGAAGAGATTATATACGACGTCATATGCGAAAGCATCTAAACGATACACAGAGCCACCAATTGCACTGCTCCACTTGCAACTATGCATTCGATGATATTAAATCTTTCTTAATACATCATCGAGATGTGCATAACAATGAGATCTTTACTCAGATAAAAACTTACGAGTGCAAAAATTGCACCGCGCAATTCATAGACTCTTCCCGCTATAGAGATCACGAAGAAATTTGTCGGAGTTTGCAGGAAAACACACGAGATAAAATCTATTCTGACATTGAACAAACTTACATCCCTAATAGTTATTCCAAAGTTGGGGACTTGGAAAAGTCTTGCGGAAGAATTATAATCGGTTCTTGCAATGACAGTACCTGCAACTGCATGGACAGTACATGCATGAACTATGCTAATCGAAATTGCATAAGTTCTGTATGCACTAGCGATAATAATGTGACAGACTCATGCACGATTCCTATAAGTTCATGTAGTAGCAATGCATCTCTAGACACAAACCTCCTAAACagaaattgtacaaatttaatatattctggTACTAATAATGTACCTAACACTCGTATGTATTCACCTACCAAAATAGTGGATCACGCAAAAAAATCGGGTCCTCGTGTCATTCTTAATCAGAAACTTACTAGTAACTATGACTCtagattttatcaaaatcgaaTTAAGTCTAGTCAAGAATTTCGTAGGTTGAAGAAAGTTGAGGAGCCTGTTTtactaataaataatgaacCTACGGCGATGGTCCTTTCGGAGGAGGTCACGCATTTAGATCCTGCATCGGAGTACGCTTATCTGAACATGgacaaacaaaatattcgTGACAAGAATGTACTATTGGAAGTAGAAGAGGATATGATTCCAAATACTACTGTTcatgaatatgaaaatcacATAGAGCATTTTTCAAGTAATGCATCACCTGATCAACTTCAAGCTCAGCTCTGTCTGCCATCATCCAGTAGTAACAATATCTACGTAAGAGAACCCATATCTTGGAAACAATTGTAA
Protein Sequence
MCLRRINATNEFFNTIISSDKLFNKILRKKQSKHSSLSDTHKDIEYDRSKKHTGSNEQKERNPFLITVETSGSMKETNSGVIMKSANVDAEYQYIEYRKCNSKDNTEKIGRTIENNKLLSDIHGKFTKNAVDSSVKDGITKIDDLSVVAIESKINDDSLYIENDNVHDTEHRSTSISDSQHIIQNENLDSSGNELTMVPKTSAVLISMKNNVATCNGHWQSLSNDILQKKDYRCNVISKNESVIVSTEAATTVVHKSLNNQNVYNDFVKQQPLICNDNSSVMLKGSSNVVIGLANNVIAKNSAKIPLEVLRCPDCEESVKIFSLEERRLFFAYLKQHSCNKMKNQENSTSKYKSNQVVDSFSEYKERYQTKKRKRKETQEVGDLGKSSSRSWPDGDLPADPGPDPAPQEDIFEDDVRLDDDFHWPMPKRNRRLHRCPSCDFITKSAVRLKSHQKLHRMDKRQNIYYTGCRHCYKQFETSVEARKHERLVHISNGAKNSLCEYCGLMKPQKTLRDHILKQHTVESEIEMQGCNVCGKMFISPTSLYLHKKTHSIERQHLCDLCGKAFKQRMAMRRHYMLHFPRTPPKFTCNVCDKRVTTRGSLRLHMMRHTGEKPQKCPECHMVMRHGLKHHMRLHSDDAPFKCVVCSADFKRRDYIRRHMRKHLNDTQSHQLHCSTCNYAFDDIKSFLIHHRDVHNNEIFTQIKTYECKNCTAQFIDSSRYRDHEEICRSLQENTRDKIYSDIEQTYIPNSYSKVGDLEKSCGRIIIGSCNDSTCNCMDSTCMNYANRNCISSVCTSDNNVTDSCTIPISSCSSNASLDTNLLNRNCTNLIYSGTNNVPNTRMYSPTKIVDHAKKSGPRVILNQKLTSNYDSRFYQNRIKSSQEFRRLKKVEEPVLLINNEPTAMVLSEEVTHLDPASEYAYLNMDKQNIRDKNVLLEVEEDMIPNTTVHEYENHIEHFSSNASPDQLQAQLCLPSSSSNNIYVREPISWKQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00292536;
90% Identity
iTF_00297134;
80% Identity
-