Basic Information

Insect: Cephus parvus
Gene Symbol: PRDM1
Assembly: GCA_030142435.1
Location: JARQTA010000546.1:485224-489237[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.4e-05 0.002 18.8 2.5 1 23 736 758 736 758 0.99

2 5 7.3e-06 0.0006 20.5 5.1 1 23 764 786 764 786 0.98

3 5 1.5e-06 0.00012 22.7 4.2 1 23 792 814 792 814 0.98

4 5 0.00096 0.079 13.8 1.5 1 23 820 842 820 842 0.97

5 5 6.4e-05 0.0053 17.5 0.2 1 22 848 869 848 869 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.4e-05	0.002	18.8	2.5	1	23	736	758	736	758	0.99
2	5	7.3e-06	0.0006	20.5	5.1	1	23	764	786	764	786	0.98
3	5	1.5e-06	0.00012	22.7	4.2	1	23	792	814	792	814	0.98
4	5	0.00096	0.079	13.8	1.5	1	23	820	842	820	842	0.97
5	5	6.4e-05	0.0053	17.5	0.2	1	22	848	869	848	869	0.96

Sequence Information

Coding Sequence: ATGGAGTCGAGCGAGTGGGATCACGCGACCTTGAGGGAGGAGGAATTCGAGCAGCATGCAGTCTACTTGGTACCGGATGTTGCCGCATCGGCGAACGATCCGAATCGAGCTGAGGCGTCCTTACCCAGGAATCTCGTCCTGAAACCCTCCCAGGCACTCAACGATGTACGTTCCTCTACAACAGAATCCTTTCTCGAACCGTCCTTGGTACTGGGCGTGTGGAGTACTAGTTACATACCTAAAGGCACCCGTTTCGGTCCTTTGGTAGGACAAGTTTACACGAAGGATTCAGTACCGGCTGATGCGaatcgaaaatatttctggAGGgtatacaaaaACAATGAATTGTTCTATTATATCGATGGCTATGACGTACAGAAGTCAAACTGGATGCGATACGTTAATCCAGCTTATTCCTCTGAATCCCAAAATCTCATTGCCTGTCAATATAAGATGAACATCTACTTTTACACCATAAAACCGATATTGCCAAATCAAGAATTGCTCGTTTGGTACTGTCGAGAATTCGCGGAAAGGCTCAACTACCCTTTGACTGGCGAATTAATGCTTCAGAGAATAAGGCAACAGGTACAACAATCGACGATACCAGCGGAAATACCACCGGCGGTCGAATCGACGCCGCTCAAGGAGTCGAGCATCTACGAGAGGCGTTCCCAGATGACCCCGACAGACGGTTCGGTCAGATCCGACGAGGGTTACCATTCGAATGGCTACCACGACGAGATACTGACACCGCCGGAAGAGTCTAGCGAATCGGACTCGGAGAACAACTACGTCCTGGACTTCAGTAAGAATGCAAAGACTTCGAGCAACGAGGTCCTGAAGCAGGACAGCGCGGCGAAGAACGAGTACAGAAAGGTGAAGATAAAGATCACGAAGACGTATAACAACTTCACGAAGAACATGGAGAACATTAAGGAGAAGGACGAGCTGTCGAGCGGGGCTGTCACGCCGGAAATTCAAGTGCAGAAACCCGTATCGCCGATGGTCATTCAGAAGAACACGGTGCTCTCCTCCTCGAACGAGGACGAAATGACTGATAAGAAGCCATTTTACGAATCGGAAGCTAAGGCTACGTCCTTGCCAATACCCGGTGGTAGACCACCGTACTTGACCAATTCCAGTAGCATCCTGGAGAACATACTCCTGCGCAACAATACAGACAGTAACAACAACACTAACAATAATCATTCTGGTAATCACATGAGACACGTGGACTCAGTAACACCACCACCGTCCAGCCCCACAGAGATGGCCTACTCGTACAAGAAGTCCCACAGGTACGGGAACATCCTACCATGCAGTCCAGACTCCAGCTCGAATCTACCGATGCAAACGGAAGCGTCAAACATCGTGAACTCGACCAGCGGTTTGCTTCCGAGTCCTGGGAATCTGCATTCCAGTTCCGGTTCAATAATTCACTCCAGCTCGGGTAACCTGCACTCGAGCACAGGGCCATCCGGTAACCTGGTGCATCCATGCTCGGGCAATCTCCACTCCAGTACCGGTGTCAGTAGCAATACCGGAAGTCTTCACTCCAGTAGTCCTGTTCATATACATTCAAGCAGTCCCGGCAGCAACGTCCTCTCCTCGAGTACAGTCCTCTCCTCGACCAGCGGTCTTCACTCGTCCACACCCGGTGGTCTGCTGAAGCAACGAAAATCAAAAAGTCCATCACCAGCCACCACGATCCTCTATACCAACGCCAGTATCACCCCGATGTCGAGTGACTCCAGTAGTATCTACATGAATGCAAATTCCAGTGTCTCACCTATATCCCCGATACAGTCGCCGTCCTACCCGTACAATCTTTATCATCAGAACAGCACGTTGCACCACAATGCTCCGTTATCAATTAACACCGCGTACTCGCCGACTCCAACGGGCAATCATCTTTACGATAGAAACGACAGGAGACTGGATTCTCATCAGCTGCCAACTTCCTCGACGATGCAGATGGACAGCAATCAAGCCCTTATCACGGGCACGCACAATCTTCACCTAGGACATCATCCGGGACTTACGATTACCAATGCCTCTATAAACAGATACTCACCAGCCAGTTCATTGTCACCGGACGATCATGGCTGCTCGCAAAGTGGTTCCCTGAGTCCCAACTCTCAAGGGTCAAGAGGTTACCGGTCTCTTCCGTATCCACTGAAGAAAAAGGACGGGAAGATGCATTACGAGTGTAACGTGTGCTGTAAGACATTTGGTCAGCTGTCCAATCTCAAAGTTCATCTCAGGACCCATTCCGGTGAGAGGCCCTTCAAGTGTAACGTCTGTACCAAGAGCTTTACGCAACTGGCCCATCTTCAGAAGCATCATCTCGTGCACACAGGCGAGAAGCCACATCAGTGCGAGATATGCAAGAAGAGGTTCAGCTCCACTTCGAATCTTAAGACCCACCTGAGACTTCACTCTGGTCAAAAACCCTACGCCTGTGACCTCTGTCCGGCCAAGTTTACGCAGTTTGTACATCTGAAGTTGCACAAGAGGCTGCACACGAACGAGAGGCCCTACACGTGTCAAGGATGCGACAAGAAGTACATAAGCGCCAGTGGGCTCAGGACACACTGGAAGACCACCAGCTGCAGACCCAATAATATTGAGGATGAACTCGCATTGGCTGCCGCAGTTGGTTCCCCGACCTACTACGAATACGGTCCGGACATGAATGTCGCGAATATGCCGAAGGAATGCGAGCTGGAGCACATTGAGAATTATGAAAGGCGCAACGGGTCAGCGCATGGTCCGCACTCGACTTCACTTCACAATCTCGAAAATCCTGTCGCTCGACCGAGCGTCATAGAAACATCACAGCCACACATTATCGAGTGTACTTAA
Protein Sequence: MESSEWDHATLREEEFEQHAVYLVPDVAASANDPNRAEASLPRNLVLKPSQALNDVRSSTTESFLEPSLVLGVWSTSYIPKGTRFGPLVGQVYTKDSVPADANRKYFWRVYKNNELFYYIDGYDVQKSNWMRYVNPAYSSESQNLIACQYKMNIYFYTIKPILPNQELLVWYCREFAERLNYPLTGELMLQRIRQQVQQSTIPAEIPPAVESTPLKESSIYERRSQMTPTDGSVRSDEGYHSNGYHDEILTPPEESSESDSENNYVLDFSKNAKTSSNEVLKQDSAAKNEYRKVKIKITKTYNNFTKNMENIKEKDELSSGAVTPEIQVQKPVSPMVIQKNTVLSSSNEDEMTDKKPFYESEAKATSLPIPGGRPPYLTNSSSILENILLRNNTDSNNNTNNNHSGNHMRHVDSVTPPPSSPTEMAYSYKKSHRYGNILPCSPDSSSNLPMQTEASNIVNSTSGLLPSPGNLHSSSGSIIHSSSGNLHSSTGPSGNLVHPCSGNLHSSTGVSSNTGSLHSSSPVHIHSSSPGSNVLSSSTVLSSTSGLHSSTPGGLLKQRKSKSPSPATTILYTNASITPMSSDSSSIYMNANSSVSPISPIQSPSYPYNLYHQNSTLHHNAPLSINTAYSPTPTGNHLYDRNDRRLDSHQLPTSSTMQMDSNQALITGTHNLHLGHHPGLTITNASINRYSPASSLSPDDHGCSQSGSLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCEICKKRFSSTSNLKTHLRLHSGQKPYACDLCPAKFTQFVHLKLHKRLHTNERPYTCQGCDKKYISASGLRTHWKTTSCRPNNIEDELALAAAVGSPTYYEYGPDMNVANMPKECELEHIENYERRNGSAHGPHSTSLHNLENPVARPSVIETSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00297848;
90% Identity: iTF_00297090;
80% Identity: -