Cpar007872.1
Basic Information
- Insect
- Cephus parvus
- Gene Symbol
- Sec3
- Assembly
- GCA_030142435.1
- Location
- JARQTA010000553.1:473724-481161[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0004 0.033 15.0 2.2 3 23 1252 1273 1250 1273 0.96 2 6 3.3e-06 0.00027 21.6 3.3 1 23 1296 1318 1296 1318 0.97 3 6 0.00012 0.0097 16.7 1.5 1 23 1324 1346 1324 1346 0.94 4 6 5.1e-07 4.2e-05 24.1 6.1 1 23 1352 1374 1352 1374 0.98 5 6 0.00032 0.026 15.3 2.0 1 23 1380 1402 1380 1402 0.98 6 6 0.0012 0.097 13.5 1.7 1 23 1418 1440 1418 1440 0.98
Sequence Information
- Coding Sequence
- atgGCAGCAATTCGTCATACATTACAACGTGAGATCTTTACGCCAAATGATGAGAAACTTTTGAGTGTATGCTACGTGAGCAaagcatacaaaaaaaagaaaacaagctTTCTGTGTTTGACAACAACTATAGACACACCGGGAGTACTGTTACTTTACCAGGTCAAGAAGAACGATAAGAATGTCTTCAAGAAAAAGCAATCTTGGCCTCTCACCGATATACAAACAGTGGACACTGTTACTCCTGATTCTCTTGATTTAGAATTACATATTGACAAGGTCTACAAATGGTCTGCTACAACAGCACAAGAAAGACGAACATTCATAAGCAATTTATATACTTACTCATGCAGCCTACCGCAGAGACCAACATTCAAGAATGTTCCCAAGGATTGGCTGATGGATCCAGTAACATTGAAGGAGAGCGACAGTATAAGTTTTACACCAGATTTACTGGCATCTCCTATCCCATCTGATTATCAACCAATAACCGATAAGGAAGCAGCAGATTTGGCGACTTTAATGTCAGGATGCGATTATGCAGTCTCTAACGCTGAACTTTTCATGGAGACTCTTTCAAAGGATCTGTCGGTTCTTGATGggGAAAATGTTCAATCAGTTCTTGCATCTGAAACTCAAGTAACACAACTCATGAATGGTATTGAGGAAGCTATTACAGAAGCTTCCCTTGTAGAAGCTCGACTTGCAGTGTACGACGAAGCTCTTGGTAGGATAAGAGAAGCAATGGCCAGGGTGGGCCAGAAGAATCAAGCAATTCATACAGCGAATCACAATGCTAGACTACTCTTGGAACAATTGGATGCTGTAATAACTCAACTGGATATTCCGGCTAAACATCAACGTGTCCTAAGTGAAGCTGAGCTTCCTGGTGGACGAGAAGAACTAAGTCTAGCAGGTACTGCATTATTAAAAGCAATGCAAGCTCCACTTCCTCCGGGACTCGACAGACTCGGTGCCGTCTCGGAACAAAGAAGACGCCTGGATAAACTGAAagcgaaattttcattaatagtTGCTAGACATTTAAACAATCTTTTTATTCATCTGGGAAACGATATTGGCGAGACTCCAGCATCGACAACAGACTTAACACTGCCAGCTCATCAGACAGTTCATCGTGAGCTAGAACCTTATACAGAACTGATGCGACTGCTGCGGGCCCTGGATAACAAAGCATTCATGCAATTGACAAAGGTCTACACGGGCACAATGAGTAAATTGTATCAAAGGGACTTGAAGCTCTTCTTCGAGGAGGCCAAGACGCGTCTAATCGGGAAACGACTTCACAACAACCCATCCAAGTCCAGTGGGCAGAAAGGCGAGGACCTGGTACCAGCAGCACCGATTTGTCTTCTTGGCGGTGAAATCTGGGCGCCTCAAGGTGAAGGTGCTTTCCTGGACTCTGTTTTGGATCGTGTCCTATCTCAGATGCAACCGGTTTGCCTAGCTGAACAAGCCTTTTGCATATCCTTCCTTCAACTGGACTCTGTTCTGTCCCCATCGAAGGGTAGTGAAGCTGATGAGGTTGATAATATGAGTAACGGAGCAACAAGTCCTGGATCAGCCACTTCAACAGCTAGTAAAAAATTGGAGCGCCAACTCAACGAGGAAGTGCGAGCGACCATGGCTGCCATATTTCCTTCTTTGGAACCGGAACTGAATAACTTTATATCATATCTAGATAAAATAGACAGCTTttgGTGTATGTTCGTCCTGGTGCGGTTATCTCAACACGTCATGTCAGCACAGGATACTGGATCGTTCCTGTCGATGACCTTTGCTTCTGCACTTGTCCAAGTCAAAAGGTCATTCGATAAATTCATGCAAGCCCAGCTTCAATCTATTTTACGCGACACTAAAGTCAATCGCAGGAATAAGTGTGGTATACTGCCGTACGTGGAGAACTTTGAAAACTTTGCTAGAACTGCAGAGAAGATCTTCAAGAATTCAGACAGAAAAATTGACCTTGAGAAATGGTACACGAAATTGGTCAGTGCCATGTTCGAAGCCATTGTTATTCACAGTGCAGAACATCATAAAACGCCACAGGAAGTTATTAAAATGGagAACTTTCATCATCTTTACGATCTTCTGTCTCAATTAAAAATCTCTGTGTTGGATCACGAACGTAAAGAAGCTAAGCAAAAATATCATGATGCTTTAAGAGCTTatgttatacaatattttggGCGGCCTTTAGAGAAACTAaacCTGTTCTTCGAAGGAGTCCAAGCAAAAGTAGGTGCTGGTGTTAAGGAATCAGAAATTAGTTATCAAATGGCCTTTAGTAAACAGGAATTACGAAGAGTAGTTAAAGAGTATCCAGCAAGAGAAGTAAAGAAAGGGCTGGAGAATTTGTACAGAAAGGTTGAGAAACACTTGTGCGAGGAGGAAAATTTGCTTCAGGTTGTATGGCGCGAGATGCAAGGAGAATTTATCGCACAGTATATCTACATTGAAGAACTGATCCAGCGCTGTTATCCGGACAGTATGGTTCTGGAAGGAGATTCATTGCCAAAGATAGTCTGTCACGAATGTGTTAAGAAGCTGGAGAGTTACATTGAATTTAGAGAGACTGTTGTCAGTGCTGAAGGAATGTTGGAATCATACTTTACGTCCTTGCGATTCTCAGAGGACTTCCTTAAAGAAGGCAAGGTCTATGTGAAGAGTAATGTGAAAGAAAGACCACCTAGTCCTCAGGAAGATCCATTGAAACTGGAGAAAATTCCATCTCCGTCACAAGTGTCAGCTAATCAGATAGCTACGACGGAGGAACAGTCCCAACAGCAACAACACCCACAATCTCTTGTTGTCAGCAATGTGAATGggtcaaatattcaaataatcagTGGAGTGCAGGCAAGGGTGCAGCAATACAAATGTGCTATGCAGATGCAACCAGGTGGCGTCGCGGCGGCAGTTCTGGAAGCAACGGCAGAGACACACTACAGCTACCAACAACAGACCTCGCAACCAGTGACgcaacagcagcagccgcAAACTAATCAAACGCAAAGTCAATTGCCTCAACAGCAGAATCAACCACAGACTGCGCAGATGCAGCAAgttcaaaatcaaatacaGAGCCAAAGTCAAATAACCCAACAAATCCAGCCACAGCGTCAATTGAATCAGCAACAGAGTCAACCGACTCAAATAAATCAACAACAAAATCCTTCGCAGCAGATAGGACAGCAACAACCACAAGCACAGATCACACAGCAGATACAACAACTGCAAAGGCAGCATCGCGAGTTCGAGAAACAACAACGGCAACTGCAACAAATTGAGAAGCAACAGGTGCAGATTTCGCAACAGGACGCgcagcagcatcagcagcaacaacaggcGCAGATAGTCCAACATCAAAACAACAACGTAATACTAAAAAGTGAGCCGACCGTGGAACAAAACCAGCAAGTGATCAGGAAGGTCGAGTCTCAGGAAAACGATGCTGGCAACCCAAATGTGCAAACCTATACGACTGTCCAAGCATCCCCAGAGGTTCTCCTAAGTCTAGGCTTCAAGGAAGCTGCTTTGGCTGCTCAAGCCGCCTCAGGAAGAGACGATAAGGAATTCAAAGACTATGTAAAGAACAACTCTGACGACGGCGTCTCCCGCAATTCCATTGGTCAGATATCCGAATTCCTCAGGATACGGACAGTCCCGGAATCCACGTCTCTTATCACCGTAAATCCCCAGGCAATATCACAGTCGTCCCGCAATATCATATGTTGTGAATGCGGTGAAAACTTCTCCTCGAACAGTCAGCTAAACGGTCACACGTGTACAGCACATCCGCTACTGAACGAAGTATCAGACGTGACCATCAAGGACGAGAGCGCGCAAACGAACGGCAGTTCCTTCAGCTGCGACGTTTGCGGCAAACCATTCAAGAGGAAAGAGCATCTATTTCAACACCGGAAACTCCACACTGGGGAACGTCCTTACGTATGTACAACTTGCGCCAAAGCGTTCAGCCGCAAGGAACACCTGGTGCGACATTCGGTCTCTCACACCGGGCAGAAGATGCACGAGTGCGAGATGTGCGGGAAAAGTTTTTCACGCAAGGATAATCTTCACAAGCATCGCAAAACCCATGGGGTGTCGGGGCCTTACATATGCGAGACGTGTGGCAAATCCTTTGTTGTAAAACATTATTACTTGATGCATCTTACCACGCATGCACCAAGCATCGTCGGCGGTATTGGATGTCAGGATCCTCTACCTTACAAGTGTGACATCTGTATGAAGGCCTTCTCCGTAAAGCAGTATCTAACTACTCATAAACTAAGACACAGGTCTAAGAACAATAGTAATCATGGCAACAATACGTCAAACgtgcaacaacagcagcagcagctgcaACCTTCGACGACGCCTAACGGAGTCAATGTTACTTCCAGCAATGTTACCAATTCTGCAGCAAATATAAATCCCAGCAATGGACAGAGTGGTACATCGGCCGTGGAAATACAAAGTGTCATTGAAAGAAATGATCAGACGAATAATGGGGCATTCACAAGTAACCAGTATCACGGGAATGTGCAACAGTTTCAATGA
- Protein Sequence
- MAAIRHTLQREIFTPNDEKLLSVCYVSKAYKKKKTSFLCLTTTIDTPGVLLLYQVKKNDKNVFKKKQSWPLTDIQTVDTVTPDSLDLELHIDKVYKWSATTAQERRTFISNLYTYSCSLPQRPTFKNVPKDWLMDPVTLKESDSISFTPDLLASPIPSDYQPITDKEAADLATLMSGCDYAVSNAELFMETLSKDLSVLDGENVQSVLASETQVTQLMNGIEEAITEASLVEARLAVYDEALGRIREAMARVGQKNQAIHTANHNARLLLEQLDAVITQLDIPAKHQRVLSEAELPGGREELSLAGTALLKAMQAPLPPGLDRLGAVSEQRRRLDKLKAKFSLIVARHLNNLFIHLGNDIGETPASTTDLTLPAHQTVHRELEPYTELMRLLRALDNKAFMQLTKVYTGTMSKLYQRDLKLFFEEAKTRLIGKRLHNNPSKSSGQKGEDLVPAAPICLLGGEIWAPQGEGAFLDSVLDRVLSQMQPVCLAEQAFCISFLQLDSVLSPSKGSEADEVDNMSNGATSPGSATSTASKKLERQLNEEVRATMAAIFPSLEPELNNFISYLDKIDSFWCMFVLVRLSQHVMSAQDTGSFLSMTFASALVQVKRSFDKFMQAQLQSILRDTKVNRRNKCGILPYVENFENFARTAEKIFKNSDRKIDLEKWYTKLVSAMFEAIVIHSAEHHKTPQEVIKMENFHHLYDLLSQLKISVLDHERKEAKQKYHDALRAYVIQYFGRPLEKLNLFFEGVQAKVGAGVKESEISYQMAFSKQELRRVVKEYPAREVKKGLENLYRKVEKHLCEEENLLQVVWREMQGEFIAQYIYIEELIQRCYPDSMVLEGDSLPKIVCHECVKKLESYIEFRETVVSAEGMLESYFTSLRFSEDFLKEGKVYVKSNVKERPPSPQEDPLKLEKIPSPSQVSANQIATTEEQSQQQQHPQSLVVSNVNGSNIQIISGVQARVQQYKCAMQMQPGGVAAAVLEATAETHYSYQQQTSQPVTQQQQPQTNQTQSQLPQQQNQPQTAQMQQVQNQIQSQSQITQQIQPQRQLNQQQSQPTQINQQQNPSQQIGQQQPQAQITQQIQQLQRQHREFEKQQRQLQQIEKQQVQISQQDAQQHQQQQQAQIVQHQNNNVILKSEPTVEQNQQVIRKVESQENDAGNPNVQTYTTVQASPEVLLSLGFKEAALAAQAASGRDDKEFKDYVKNNSDDGVSRNSIGQISEFLRIRTVPESTSLITVNPQAISQSSRNIICCECGENFSSNSQLNGHTCTAHPLLNEVSDVTIKDESAQTNGSSFSCDVCGKPFKRKEHLFQHRKLHTGERPYVCTTCAKAFSRKEHLVRHSVSHTGQKMHECEMCGKSFSRKDNLHKHRKTHGVSGPYICETCGKSFVVKHYYLMHLTTHAPSIVGGIGCQDPLPYKCDICMKAFSVKQYLTTHKLRHRSKNNSNHGNNTSNVQQQQQQLQPSTTPNGVNVTSSNVTNSAANINPSNGQSGTSAVEIQSVIERNDQTNNGAFTSNQYHGNVQQFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -