Cpar012698.2
Basic Information
- Insect
- Cephus parvus
- Gene Symbol
- wek
- Assembly
- GCA_030142435.1
- Location
- JARQTA010000860.1:880107-882868[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 8.7 7.2e+02 1.3 0.8 2 8 53 59 46 69 0.56 2 16 7 5.8e+02 1.6 0.1 2 23 199 221 198 221 0.92 3 16 2.4e-05 0.002 18.8 2.1 2 23 226 248 225 248 0.95 4 16 0.62 51 4.9 0.0 3 23 309 329 307 329 0.96 5 16 1.6 1.3e+02 3.6 1.5 2 23 335 357 334 357 0.94 6 16 0.00026 0.021 15.6 0.1 1 19 367 385 367 388 0.94 7 16 0.0008 0.066 14.0 9.3 1 23 397 419 397 419 0.98 8 16 0.00014 0.012 16.4 0.6 1 23 432 454 432 454 0.98 9 16 0.0008 0.066 14.0 5.0 1 23 462 485 462 485 0.97 10 16 3.1e-05 0.0026 18.5 4.0 1 23 491 513 491 513 0.98 11 16 0.00048 0.04 14.7 1.0 1 23 516 539 516 539 0.96 12 16 0.11 8.7 7.4 1.6 1 23 558 580 558 580 0.95 13 16 0.00086 0.071 13.9 0.8 3 23 588 608 586 608 0.97 14 16 1.4e-07 1.1e-05 25.9 5.3 1 23 613 635 613 635 0.98 15 16 0.00017 0.014 16.1 4.8 1 23 643 665 643 665 0.98 16 16 0.00074 0.061 14.1 0.9 1 23 671 693 671 693 0.98
Sequence Information
- Coding Sequence
- atggATCAAAATGGAATGAAAGTTGATGAGACTGCTTTGGGACCACAGAAGCTCCCTATTGAtgatcataataatattgTGATTGGAACAGATAACATAGATTTCACTAAATCAAAAACAAGAGACACTCAAAATGTTTGCCGTCTATGTGGACAAAAATGCAAAGATTGTGTATCTATTTTTGAAGACAATAATATGTTAATTGCAGAAAAAATTGCTAGATGTCTACCAATAATTGTTTTATCTACGGATGAATTGCCATTATATATTTGCAAACGATGTTTACACTGTTTAAATATCAGTTACAAACTGATTGTTAATTGTTTAAGAGTAGATGCACAGTTGCGAGCGGAGTTTGCACAGTTGAAAAAATCAGACAATACATTAAAGGTATTAGAAGATTTAGGAAAATCAGAAATCATTGCATTAAAGGAATTTGAATCACCAGGAACAATTATAGAAAAGGAGCAGTTGGAACAACTAGAAACGAATTCAAATAGCAATGAAAGATCTGTACAacatatttccataaaaaCTGGTCAAGCCTCTAAGATAGACAGTAAGTTAAAAGAGATTGCTATAAAGGGCCCTGTAGAATGTGAATTATGCTTAACGCTGTTTCAAGATATGGACCAGTTTGATAGTCACATAGAAAAtgtacatttattaaattggcGATGTAATTTATGTGACAAAAGCTTCAAGACttctaaaaaattgataattcaCAAACAATCAAAGCATGCGggcaatattaatatttgcaaaatttgtgTCAAGTCAGAAAAATCTAAAACAGAGTCAGATTCGGACATCTTTGACCTTCCactggtaaataaaaaacctCCATCGCCAGTACAGACTATGAATACTACAGAAAATCaaagtgaaaaagtaattGCAGAAAATTCATTGGATGTTATTTGCGAAATATGCCATGTTGCTGTGGACGATGATGATCTTCTTGAGGGACATAAAAAGGTTCATCAAcctaaaaaaatgacatgcgTTATATGTCAAACGGAATGCAATTCTGTCTACGATATGTTTCTCCACAAGAGAGAATCCCACAATAAATACAGGAAAGTTCAGCTGAAATTTGTTTGTGACCTGTGTGGCAAGTTTTTCTCTAATAGCTGGCAATGGGAAAATCATGAGGAAAATGTCTGTCGTCAAAAATTCTCCATTCACACGTGCAAATACTGCAAAAGCAATTTTTCGACGAACCACAAGCTTACACGGCATTTGAGAaaacatAAAAAGGAAATGATGGATGATCCCACTGTGACAGTTTATAAATGTGTTGCTTGTCCCAAGGTTTTTGTCGATAAAGAATTCTATCAAAAGCATAGAAATGTGCATGATCCAGAGTGTTGGGATACACATAAATGTACTTTGTGTAATCGTTCATTCAGGGATAATGTAAGACTTAAAGAACACCATCAATCCATACATGAAGGTGTTAGGCCACATCAGTGTGATGTTTGTGGAAGAACATTTCATCGATTATCTAACATGAGGGCACATCGAATCAAACATTTTGGTCACAAGTGTCCCCACTGCGAAGAAGTATTTGAACGAACTCGTCCTCTTGCAAGTCACATTCAAAATGTTCATGGACTCGAACCTGAGATCAAAGGACAGTCTAAAAGACAATACACTAGTAGCTGTTATGTATGTCGATTCTGtgggaaaaaattatctacgtaCCAATCGGTATTGGACCATGAGCATATACATACTGGCGAGAAACCATATGGCTGTAATATTTGTGACAAGAAATTTAGGAGTTACACGTCAAAATGGGCTCATGTGCAAAGACATGAAAAAGGCAATTATGTCTGCGAACACTGTGGAAAATGTTTTAGTTACAAGCAAAATCTCACCACACATATGCAGATACACGCTCCTATCGAGGATCGCAAGCATCGGTGCTCTAAATGTGACAAACGTTTCCTTCGTAAAGCCCATCTCGACGTACACATGAGAATTCATAATGGTATAAGACCCTACACTTGTGATATATGCTTGTTTAATTTTACGCAATTGGGCGACATGAAAAGACATAGGGCGAGACACGCCAATGGTGAAGTCCGCGTAAGGCAGCCGAGAACTAAATCTATGCCGACAACCAGCAACGAGGATACCAATTAA
- Protein Sequence
- MDQNGMKVDETALGPQKLPIDDHNNIVIGTDNIDFTKSKTRDTQNVCRLCGQKCKDCVSIFEDNNMLIAEKIARCLPIIVLSTDELPLYICKRCLHCLNISYKLIVNCLRVDAQLRAEFAQLKKSDNTLKVLEDLGKSEIIALKEFESPGTIIEKEQLEQLETNSNSNERSVQHISIKTGQASKIDSKLKEIAIKGPVECELCLTLFQDMDQFDSHIENVHLLNWRCNLCDKSFKTSKKLIIHKQSKHAGNINICKICVKSEKSKTESDSDIFDLPLVNKKPPSPVQTMNTTENQSEKVIAENSLDVICEICHVAVDDDDLLEGHKKVHQPKKMTCVICQTECNSVYDMFLHKRESHNKYRKVQLKFVCDLCGKFFSNSWQWENHEENVCRQKFSIHTCKYCKSNFSTNHKLTRHLRKHKKEMMDDPTVTVYKCVACPKVFVDKEFYQKHRNVHDPECWDTHKCTLCNRSFRDNVRLKEHHQSIHEGVRPHQCDVCGRTFHRLSNMRAHRIKHFGHKCPHCEEVFERTRPLASHIQNVHGLEPEIKGQSKRQYTSSCYVCRFCGKKLSTYQSVLDHEHIHTGEKPYGCNICDKKFRSYTSKWAHVQRHEKGNYVCEHCGKCFSYKQNLTTHMQIHAPIEDRKHRCSKCDKRFLRKAHLDVHMRIHNGIRPYTCDICLFNFTQLGDMKRHRARHANGEVRVRQPRTKSMPTTSNEDTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00252290;
- 90% Identity
- iTF_00252290;
- 80% Identity
- -