Cpar006465.1
Basic Information
- Insect
- Cephus parvus
- Gene Symbol
- -
- Assembly
- GCA_030142435.1
- Location
- JARQTA010000496.1:105934-110814[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.6e-05 0.0013 19.4 2.5 2 23 163 184 163 184 0.98 2 17 0.00018 0.015 16.1 2.9 2 23 191 212 190 212 0.96 3 17 2.7 2.2e+02 2.9 0.9 3 23 221 242 221 242 0.95 4 17 4.2e-05 0.0034 18.1 1.3 1 23 248 270 248 270 0.97 5 17 0.00011 0.0089 16.8 2.3 2 23 276 298 275 298 0.95 6 17 4.5e-05 0.0037 18.0 0.7 1 23 305 327 305 327 0.95 7 17 3.4e-05 0.0028 18.4 0.2 1 22 331 352 331 352 0.97 8 17 0.0021 0.17 12.8 1.0 1 23 359 381 359 381 0.96 9 17 0.00012 0.0097 16.7 0.2 1 23 645 667 645 667 0.98 10 17 0.00034 0.028 15.2 5.1 1 23 673 696 673 696 0.96 11 17 0.69 57 4.8 3.8 1 23 703 726 703 726 0.94 12 17 5e-05 0.0041 17.8 1.1 1 23 732 754 732 754 0.97 13 17 0.00037 0.031 15.1 0.2 2 23 760 782 759 782 0.95 14 17 0.00014 0.012 16.4 1.7 1 23 789 811 789 811 0.98 15 17 3.6e-07 3e-05 24.6 0.6 1 23 815 837 815 837 0.98 16 17 1.9 1.5e+02 3.5 2.0 3 23 845 865 843 865 0.73 17 17 9.9e-06 0.00081 20.1 0.6 1 23 871 894 871 894 0.97
Sequence Information
- Coding Sequence
- ATGTATCCACACAAGTCGGGGTGCATTCTTCTTCGATACAGGTCAAGCCCGCTTGATCCTCTGGATCTTTCGTTTCTGAGAGTGAAGCTGGGTCAAGACGATTTTCACATACCGACGTCTCTCAGCGTTTTCATCACGAGGGAGAGCAATGGATCTCATCATTCAACTTGGACGAAGTATTTCGGGTACGACGGCGTCAATCGGACTGGTGGCAGCCGTAACGTCAGGGGAAAACGGGAGCGATCCGCGGATCGGAACAGTCGAGTACAGAGAAATTGTGGGCAGGACGTGGTGGAGCCGAAGGCAGAGCGGGAGGAGCAACAGAAGAACGAGGATGAGGTTGTCGAAGATCCCGTTGAGTCGGTCGCGGAAAAGGTGAAAGTCCGTGGGAAGACTTCGGCGGCTCTATTGAGGAATGAAAAGAGCAGAGTAATCAAAAGAAGGGTCCACCGGGAAGGTGATCCCGAGGCTAGAAAGAGACTTCCAACCTGCGACGTATGTGACCAGACGTTCAAAGAGAAGAACAAATTGAGTCGTCACATGCGGAAGCACAGCAATTCTCGCATCTGCAAGTGTGCGATTTGCTTCCAGGTGTTTAAGTACGGGGAGTCCCTGACTCGCCACATGAAGACACACAAGGGTCCCGCGCAGCTTCATGGCTGCTCCCTTTGTAACTTTAAAGCAAACGCAAAGTACTACCTCAAGATTCACTACATCCGTAAGCACACTGAGATTTACAAGTTCAGCTGCGAGCAGTGCGGCAAGATGTTCAAGATCCAGTCGGACTATAAAACGCACGTTAAGGATCACGAAACGGAGTCCTGCGTGTGCGACATCTGCGGTACATCATATCCCAGCAAGAGTTCCCTCTACAATCACAAGCGGTACAAGCACGCGGCCAAGATCAAGGAGTTCGAGTGCACCATATGTCGCAAGCGATACAAAAGTCAGAAGAATCTGGAGATTCACGCGGAGCTTCACAAAATGAAGTACGTTTGCGAACAGTGCGGTATGGAATTCTCGATGAAAAACGCTCTTACGAAGCATCTCAGGACACGTTCGAGGGAGAAATCGTACCTCTGTACCAAGTGCGGCAAGACCTTCGGTTCAGTTAATTCTCAAAAGATGCACCTGCTGACGCACATGGGGGGAACGTCCCTACGTTTGCGACATGTGTGGACAGAGCTTCACTCAGAGATCCCCGATGATGGTTCACAGGAAAAAGCACCCTGGCGTTCATCCTCCGCCACCACCTATCAAGATTGCCAACCTGCTTCTCGGAAATACACCCAAGTCACTAATGACGTCGAACCACGAACAACGACCCTGAGTCGTTGGCCGGACTTTTGGGATACTGGAACTTCACTTTCGGTCTGGACATTAATCGAATCTTTAATTTCTAGGGAGAAAGAGCCTCCGATAGTCGTGACACGGCAAGCGAATTACGAAGAAATCAACGCGGCGAGCAGAAGGAAACGAAATAGGCGAAAGAAGGTCGCACCGTTCTGTTTGCCGCTACCACCTACCGATCACGACTCCAAGCAGCATCCTCGAGCATCGAAGAATTCAAAGATGAAGGAAACTTTACGGAGCAGACGAAAACCTCGGACGAACCCGAAAGCAAAGCCGCTGATCGCCTGCGAAGAGGCAAGCGAGGATATCAACGATTCGTCCGTCTGTACAAGgaagaggatgaggatgaggatcaGGAGTagcaggaggaggaggaaaaggaGGAGAGCGCGTAGTCAGATAAAGGCGAAGGAAGCCGTAACGAGCGGAagcgacgaggacgacgacgggATCTTCGAAGTGTCCGAGATGTCCGAGATGTCCGAGACGTTCGAAGGTGAATCGGATTCAGATTCAAATGGCTTCGTGGAGAAGGAGGGGAGTTCGgggcaaagaaaaagaaacaagaagaaaggAGGATACGCGTGCCCGATTTGCGAGGTCTCCTTCAAGCTGCGAGGCCTCTACAATAAGCACATGGTCACGCACAGCGACATGCGGCCTTACAAGTGTCAGACGTGCCAGAAGAAGTTCAAGTATAACTTTGGCCTTAAGAAGCACACGAAGGAGCAGCACAGTGATTCGGCGCCGCTTTACGCCTGCAAGATGTGCGAATTCACGACGAAGCACTATCCCTACCTGCAGGAGCACTTTACGCGGAAGCACACGGACGACTACAAGTACAAGTGTAACTTTTGCggtaagaaattcaaagtcgaGCCCGACTACAAGGTTCACATGTCGGACCACGAGACGGGACCACAGGTCTGCGACATCTGCGGCGTCTCCTACCCGAACAAGAGCTCCCTCTATTATCATCGTAATTACATGCACaccgagaagaaaaaatcattcgaaTGCAAGATCTGCAAGAAGAAGCTGCAGACCGAGAAGAATCTCGAAAGTCACATGCAGCAGCACGAGCAAACGTACGTGTGCGAGGAGTGCGGCATGAAGTTCGCTAGGAAGTACGGACTTACGAAGCATCGGCGCGTTCACACCGGGGAGAAGTCTCACCTGTGCTCCGTCTGCGGCAAAGCCTTTGCCTGCATGGCCACGCAGCGAGTTCACTTTCTGACGCACGCCGGCGTCAGGCCTTACGTCTGCGACGTTTGCGGACTCAACTTTACACAGCGATCGTCCCTGATGCTGCATTGGAAGAAGAAGCATCCCGACGCCAGTGACCCGCCCCCACCCGTAACCCTCAAGAACATACTCGAGACTATAAAATCTAATATGGATTACGACGGAAAGTCCACCACCAGTGCACCAGAGTGA
- Protein Sequence
- MYPHKSGCILLRYRSSPLDPLDLSFLRVKLGQDDFHIPTSLSVFITRESNGSHHSTWTKYFGYDGVNRTGGSRNVRGKRERSADRNSRVQRNCGQDVVEPKAEREEQQKNEDEVVEDPVESVAEKVKVRGKTSAALLRNEKSRVIKRRVHREGDPEARKRLPTCDVCDQTFKEKNKLSRHMRKHSNSRICKCAICFQVFKYGESLTRHMKTHKGPAQLHGCSLCNFKANAKYYLKIHYIRKHTEIYKFSCEQCGKMFKIQSDYKTHVKDHETESCVCDICGTSYPSKSSLYNHKRYKHAAKIKEFECTICRKRYKSQKNLEIHAELHKMKYVCEQCGMEFSMKNALTKHLRTRSREKSYLCTKCGKTFGSVNSQKMHLLTHMGGTSLRLRHVWTELHSEIPDDGSQEKAPWRSSSATTYQDCQPASRKYTQVTNDVEPRTTTLSRWPDFWDTGTSLSVWTLIESLISREKEPPIVVTRQANYEEINAASRRKRNRRKKVAPFCLPLPPTDHDSKQHPRASKNSKMKETLRSRRKPRTNPKAKPLIACEEASEDINDSSVCTRKRMRMRIRSSRRRRKRRRARSQIKAKEAVTSGSDEDDDGIFEVSEMSEMSETFEGESDSDSNGFVEKEGSSGQRKRNKKKGGYACPICEVSFKLRGLYNKHMVTHSDMRPYKCQTCQKKFKYNFGLKKHTKEQHSDSAPLYACKMCEFTTKHYPYLQEHFTRKHTDDYKYKCNFCGKKFKVEPDYKVHMSDHETGPQVCDICGVSYPNKSSLYYHRNYMHTEKKKSFECKICKKKLQTEKNLESHMQQHEQTYVCEECGMKFARKYGLTKHRRVHTGEKSHLCSVCGKAFACMATQRVHFLTHAGVRPYVCDVCGLNFTQRSSLMLHWKKKHPDASDPPPPVTLKNILETIKSNMDYDGKSTTSAPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -