Cpar005438.1
Basic Information
- Insect
- Cephus parvus
- Gene Symbol
- lola
- Assembly
- GCA_030142435.1
- Location
- JARQTA010000456.1:1442226-1445872[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8 9e+03 -3.2 0.0 4 21 161 178 160 179 0.76 2 2 2.1e-08 2.5e-05 24.3 0.0 9 40 487 519 486 524 0.85
Sequence Information
- Coding Sequence
- ATGGAGGACGATCAGCAGTTCTGCTTAAGGTGGAATAATCATCAGAGTACGCTTGTCCAGAACTTCGATACCCTCTTAGAGAGTGGCACATTGGTTGACTGCACCTTGGCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCATCAGAGTACGCTTGTCCAGAACTTCGATACCCTCTTAGAGAGTGGCACATTGGTTGACTGCACCTTGGCGGCGGAGGGGAAGTCTTTAAAGGCCCACAAAGTGGTCCTCTCCGCGTGCAGTCCATTCTTTGAGGGCCTCCTCAGCGAACACTATGACAAGCATCCCGTGTTTATACTCAAGGATATTAAGTTTAAAGAACTCAAAGCCATGATGGACTACATGTACAAGGGAGAAGTAAATATCTCTCAAGACCAATTGGCAGCGCTCCTCAAGGCCGCCGAGTCCCTGCAAATCAAGGGTCTCTCGGAATGTAAAACGAGCGGCAAcagtggcggcggcggcggcggcggggGTGGTTGTGGCGGAAGGAGCGAGCCCAGACCACCGAAAGTCGTCTCACAGCCAACGGCGCCGTCGTTGGACATTCCCCACCCGTCTTCCGGTCTCACCATAGAAAAGAACATCAAAGTTCCTAGGCAAAGTTTGACACAGGTCTCCGTCGGTGATCTGCCAGAAGACTCCGCCAGTCCCCAGCTTCCCAGAGGGCTCTCCTCCAGgGAAGGCTCGCAAAGTCCGACAAatgcgaaaagaaagaaaaggttTCGCGGTAGGAGCCTAGGCGACGACAATTCCGTTGAAAACCACGACGCATCGAACTCGAGTGACATGCCCCAGCAAATGGGGGTTTCGTCACTCGCGATCGCGCCCGTTGCCAACGAAAAGTCACACGCCGACCCCACAGACTCTCTCGGTAGTTCAGTGCTAATGCAACAGCTGGCCAAACCTGCCGACGAGATGCTCCAGATGCCGCTGGAGAGTCAACAGCCTAATGATAATTTGATAGAACCAAAGTCCGAGTACCTTGAGGATCCGGAGGAGAGTGTCGAGGACCTAACCCTCGATGACGACATGAACGATTTAAATGAGATGGAACAGGATACCAACAGAGCTGGCCCTTCACACGAATCCTCCCAGCACCCTGGTGGGGGGGCGGGAGCGCGGGCTCGGTCGAGCGGGAATTTGAGTTATGGTgaaggtggtggtggtggtgatggtgacGGTGAGGGTATTAGCGCCTGCGATGGTGCTGAAGGTGCCATGTGGGCCTCACATTTCCTCGAATGTAAAAAGGGCCCTAACACGAGGCGACCTCGACCGGACGTTGACGTAGGCGCGTTGCTCAAGTCCCTGGCTAATAAGCAGGGTAGAAAATATAGCTTAGACTCGGTTAAGATGTCTCTGGACGCGATTTTGCAGCAGGGCGTTAGCACCACTCAGGCCTCTGAAATGTACGGCATTAATCGCTCGACTCTGCAgttctatttgaaaaaattgaacgtCGTAAGAAGACGATGGAGACAACCTAGCAACTGGATGCAGCCTAGTCAGTCTTCGACTTGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLVQNFDTLLESGTLVDCTLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHQSTLVQNFDTLLESGTLVDCTLAAEGKSLKAHKVVLSACSPFFEGLLSEHYDKHPVFILKDIKFKELKAMMDYMYKGEVNISQDQLAALLKAAESLQIKGLSECKTSGNSGGGGGGGGGCGGRSEPRPPKVVSQPTAPSLDIPHPSSGLTIEKNIKVPRQSLTQVSVGDLPEDSASPQLPRGLSSREGSQSPTNAKRKKRFRGRSLGDDNSVENHDASNSSDMPQQMGVSSLAIAPVANEKSHADPTDSLGSSVLMQQLAKPADEMLQMPLESQQPNDNLIEPKSEYLEDPEESVEDLTLDDDMNDLNEMEQDTNRAGPSHESSQHPGGGAGARARSSGNLSYGEGGGGGDGDGEGISACDGAEGAMWASHFLECKKGPNTRRPRPDVDVGALLKSLANKQGRKYSLDSVKMSLDAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQPSNWMQPSQSST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294592;
- 90% Identity
- iTF_00294592;
- 80% Identity
- iTF_00294592;