Cnig005034.1
Basic Information
- Insect
- Cephus nigrinus
- Gene Symbol
- Zfy2
- Assembly
- GCA_030142395.1
- Location
- JARQSZ010000414.1:1466017-1469768[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6.6 5.4e+02 1.6 1.1 1 8 121 128 119 144 0.75 2 9 0.15 13 6.8 1.7 2 23 157 179 156 179 0.91 3 9 2.2 1.8e+02 3.1 0.1 1 17 492 508 492 509 0.90 4 9 3.1e-05 0.0025 18.4 1.1 1 23 521 543 521 543 0.94 5 9 0.0018 0.15 12.8 0.3 2 22 552 572 551 574 0.88 6 9 0.00019 0.016 15.9 1.6 1 23 580 602 580 602 0.98 7 9 0.016 1.3 9.9 3.5 1 23 608 630 608 630 0.98 8 9 0.002 0.16 12.7 4.7 1 23 636 659 636 659 0.97 9 9 0.0012 0.099 13.4 2.2 1 23 668 690 668 690 0.98
Sequence Information
- Coding Sequence
- ATGGGAGACAGCCAAGAGGAAATAATTTCCGAAACtgtaaaaagtgaagaaatcCCTGGAAGGCAAAGTGCTGGCCAAAAACGCCGAAGAACTTTGACACCAATGCGCCCTGTAGCAATTGCGCCAAAAACGAATTCACCAAAGAATATCCAAAATTTCGATTTGAATCAGgCTATTAGTAGCAGCCAGATTGACTCTGTGTTGAAGCTGATTGATATGCAAAATCAAAGCAAGGAATTTAATCTACACGAAACTGTAAATTATACGAAAGATAATCGAGAATACGACGGGATTAAATGCACGAATAATTTGCTGCCATGTAATCAGCTAATTGAAAAGTGCAATGATAATCTTCAATGCTACAAGTGTAAAAAGTGTCCATTCATAAGTTTAAACGACAAACTTGTTATGGAACATATGGTAAAGGATCATTCGAACATTGTTGAGCAACATGAACAATTGGTACTGAAATGTCCTGGTTGCACAAATACCTTTCATGCTCGGACGTCCTTACTCTCGCATATTGTGCATGATCATCAAGTACAAGAAACTGAGGCTCAAGTGATGATAGAGAAATTGTGCTACCGAGAAAAATCCattgatgaaaatgataatacaaaatcagCGCCCGAAATAACTGTTCCGataagaaaagaacaaaacgAGAGCATTTTGCAAAGACAAATCTCCAGTTCTAATTTAGAAATCTATCGATGTTTTGAGAATATTCCAGAATCCGATTTGCCCATCGATAATGCTAACACAACCGTGCCCACGAtagaaaacaatttattagttaataataatgaagtgCAATAtctgcaaaatataaataacatgcAAATTGTATTAGCGGATAATATTGAAGTGGACAGATTACAATCAATACCGATTCTCAGCGATGTCAGAACGATATCAGATAAAGCATACGAGGAAGGAATACATGTAAAGGATGGAGAATCACAAGGACAAGATCGATCCAAAACCATAgctttaaatgaattaaagcAAGGCATAAGAAACGTGGAATGTGTGGACTTCAAAAATGAATCCCAAATCCAGGAAAAATCTCAATCTGTGCAAGAGAACACTATGATAGATCGTTCTCTGCATATTGAAGACACAACGTTTACTCATATATCAGAAAATGAAGTCGATTTAGAAAAAACTAAAGGAAACATTAAGGCAGTAGAACCGAAGAAAAAAGGCAGACCCAAAGGATCTAAGACTAAttcgaataaacaaaattcAGCGGAATTAAAACAACTTGgctacaaATGCGCCATCCCAGAGTGTGGCGTGCGTATGCTTGCTcaggaaaatattgtttatcatCAGAAATGCCATGCGGTAATAACGACTGATAAGAGTAATATGAATTATCAATGCCCCGAGTGCTTAGAATTTAAATCTAATAATTGGAATAACGTGGCTGGCCACTTATGGAGGTCACATATTATCGACATGGAACTACACGCTTGTGATTTGTGCAGTTATAAAACAcctagTTTAAGCAATCTGATGAATCAACACCGTGGTATTCATGGAGATGATAGGCCTTACCTGTGTGATAATTGTGGGaaagGTTTTAAAACGACAAAACAATTACGAAATCATCGCGCCCTGCACAGAGCTAAAAACAAGGAACCGTTAGAGTGCGAAGAATGCAGACGGGTCTTCACAAATACAAGATTACTAAAATTGCATAAAGACGCAGTGCACAAAGATTGTAAACCATTCATGTGCAATTTCTGCACTTACTCCGCATCCACTAGAAGCGCACTAAAGTTACATCTTAGGCGGCATACAGGAGAAAAACCATTTTCATGCGAGCAATGTAGTTACTCAACGGGTGACCATAATTCCTTAAGAAGGCATAAATTACGACACTTAGGGTTAAAACCTTATAGCTGCCCGCATTGCAGTTACGCCTGTATACAATCTTCTACGTATAAAGTTCATCTTAAGAATAAACATCCAGGTTTGGACCATGGATTAATGTTTTCCTGCCAATATTGTTCGTACAGATCAGTTAAgaaggaaaatttatatacccaCATGGCCAAACATGAACAGAATACTTCGAAAACATCGGAGAAATCAAACTCTCCTATAACAACTAATTCGGTACCAGTACCTTGA
- Protein Sequence
- MGDSQEEIISETVKSEEIPGRQSAGQKRRRTLTPMRPVAIAPKTNSPKNIQNFDLNQAISSSQIDSVLKLIDMQNQSKEFNLHETVNYTKDNREYDGIKCTNNLLPCNQLIEKCNDNLQCYKCKKCPFISLNDKLVMEHMVKDHSNIVEQHEQLVLKCPGCTNTFHARTSLLSHIVHDHQVQETEAQVMIEKLCYREKSIDENDNTKSAPEITVPIRKEQNESILQRQISSSNLEIYRCFENIPESDLPIDNANTTVPTIENNLLVNNNEVQYLQNINNMQIVLADNIEVDRLQSIPILSDVRTISDKAYEEGIHVKDGESQGQDRSKTIALNELKQGIRNVECVDFKNESQIQEKSQSVQENTMIDRSLHIEDTTFTHISENEVDLEKTKGNIKAVEPKKKGRPKGSKTNSNKQNSAELKQLGYKCAIPECGVRMLAQENIVYHQKCHAVITTDKSNMNYQCPECLEFKSNNWNNVAGHLWRSHIIDMELHACDLCSYKTPSLSNLMNQHRGIHGDDRPYLCDNCGKGFKTTKQLRNHRALHRAKNKEPLECEECRRVFTNTRLLKLHKDAVHKDCKPFMCNFCTYSASTRSALKLHLRRHTGEKPFSCEQCSYSTGDHNSLRRHKLRHLGLKPYSCPHCSYACIQSSTYKVHLKNKHPGLDHGLMFSCQYCSYRSVKKENLYTHMAKHEQNTSKTSEKSNSPITTNSVPVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -