Basic Information

Insect: Cephus nigrinus
Gene Symbol: -
Assembly: GCA_030142395.1
Location: JARQSZ010000656.1:94338-97606[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.019 1.6 9.6 2.9 1 23 395 417 395 417 0.98

2 9 6.7e-05 0.0055 17.3 0.6 2 19 453 470 452 474 0.90

3 9 2.3e-05 0.0019 18.8 3.3 1 23 480 502 480 502 0.99

4 9 0.012 0.96 10.3 0.4 2 23 509 531 508 531 0.95

5 9 0.18 15 6.5 3.1 1 23 538 561 538 561 0.97

6 9 1.4e-06 0.00011 22.6 2.0 1 23 565 587 565 587 0.97

7 9 0.00028 0.023 15.4 0.4 1 23 593 615 593 615 0.97

8 9 4.4e-05 0.0036 17.9 2.3 1 23 621 643 621 643 0.97

9 9 3.5e-06 0.00029 21.4 3.2 1 23 648 670 648 670 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.019	1.6	9.6	2.9	1	23	395	417	395	417	0.98
2	9	6.7e-05	0.0055	17.3	0.6	2	19	453	470	452	474	0.90
3	9	2.3e-05	0.0019	18.8	3.3	1	23	480	502	480	502	0.99
4	9	0.012	0.96	10.3	0.4	2	23	509	531	508	531	0.95
5	9	0.18	15	6.5	3.1	1	23	538	561	538	561	0.97
6	9	1.4e-06	0.00011	22.6	2.0	1	23	565	587	565	587	0.97
7	9	0.00028	0.023	15.4	0.4	1	23	593	615	593	615	0.97
8	9	4.4e-05	0.0036	17.9	2.3	1	23	621	643	621	643	0.97
9	9	3.5e-06	0.00029	21.4	3.2	1	23	648	670	648	670	0.96

Sequence Information

Coding Sequence: atggaggtggaggaggaagaggcaCGGATTTGCAGACTTTGCGGACAGTGTGGCAGCATTTATATTGATGTCTTTGGAGAGGAAGGAACGAAGAGATTATTGGGACTGAAAATACATACGAAAATCAACATTCTGATAGATGAGAGGGATGCTCTGCCCAAGGTGATCTGTGTTCAGTGTCTGGGAAAACTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAGCAACTGTTACGCGATCGGTACAATCTGCCAACCTTAACAGATGTTGATGAAATTAAGACTGACAATGCAGAAGGAAGCACATCAACATCCAAGAATGGTACTGGCAAGAATCAAGAGATTTCAGACAATGATGGAGCCGACAAACAGGAACGTCTTCGTGCCTCACAAAGtgctgaaaaattacaaaaaaatgaaagaagccAGCAAGAAACACAAAATGTCACAAAGAATACAACCGTCGTATTAAAAGCTATTAAATcagtcaaggaaaagaatgtCGAAAGAGCGCAGAATGTCGAATCATGTAAAACGGTAGATACTCGCCGTTTACGAGGTCGAGGGAACGCTGAAGAATCACGTCCTACAATAATCACTGAAAATATAACAGAAGTTCCCATTGCAAGTAGATTACGTAGTCGTAGCGATAATCCGGAAACTATAGTATCACCGAATAGCAGCAATTCAAACCAGAATCCTCCCAAGCAGACACAGGAACAGGAATCGAACATGATACAGATCCCTACGTCAACattaaataaagtattaaCAACGGTAGCGAATTCTCCAAACATGGAGGTATTCGTGAAGGAAGCTACAAACCGTGGTACCGATCAAAAGGACATAAGTTACACAGTTGAATTGCGCAAGAAGCAGAACACAGAATCTGTGACTGTACTAGCCAAAGTATTTCCAGATCAGGGTTCCTGCATGGTGGATCCTGGGATAGTTGGTCTACTTGAGAATCAAAATGGCGTTGAGATACGTAATATCGTCAACACGATATTCAATCGCAACCCAAAGGAGGGAACTGCAAATTTCGATGAGTTGGAGGATCCCGAAGAGAAGCTGGATGCTTCAAAGAATCCTAAGGATCTCTTTAGAATGGATGGCGAGGAGATTCAAGTGGATGACAACGTCGAGCATATTTCtatggaaaatcaaagtaGTTATGCCTGTAGAATTTGCCGGAAAGTTtacgaaagaaaagataaatgtACCGTACACGTAAAGACTCACCTCGGTATCAAGCAATTCGTCTGCATAGTCTGCCGCGCCAAATTCGTATGTAAATCCGACGTAATGAAACACATAAGATGTTCCCATACAAATCCACGACCCATACAGTGTCCAAAGTGTCCTAAACGATTCAGGTCAAAGTTCGATTTGACAGAACACGACAATATTCACAAGGGAGTAAAACCCTACCGATGTCCTGATTGCGGTCTTAGCTATCATCATAAAGTTTCTCTGCAAATGCATCTAAAGTCACATCTGCCGCCACAAAATCTCAAATGCGAATATTGCAGTAAACTTTTCCCATTTCGTACGAGGTTATTGAGTCACATAGCGAGCGTTCACTTAAAAAGTCGACGAAAATTTCGCTGTCATTTTTGCTATAATCTTTACTCCAGTCTATCAGTTCTCAATGAACATATCAAGTCAAGACACGTTGCCACGCATACGTGTAACATTTgtggaaaaacttttaaagTTGCTTCTAAATATAAAGCACATATGCTTCAGCATACTAATCCTAAACCCTTTATCTGCAATATATGCAACAATCGTTACGCATCGAAGGCCTATCTGAATGAACATTTGTTGAAGCACGAAGGATTGCGCAAGCACGTGTGCCAAAAATGCGGTGCAAGATTCGCACAAGCCAGTCATTTGGCTGCTCATCGACATGTCCACGAAGAGAAGAAACACGCGTGTACTGTTTGCGGACGGAAATTCAACAGGCAGGATAACATGAAGGTTCATAGGAGAAGACACTTCGAAGATGCCAAGAAGAATGAGGGCAAGTCGAAAGAACTCAGACTCTCCGACAAGGCTACTGATGTTTCCATTCATCGTAACGAGAAGTGA
Protein Sequence: MEVEEEEARICRLCGQCGSIYIDVFGEEGTKRLLGLKIHTKINILIDERDALPKVICVQCLGKLEFVCDFQEECLRTQQLLRDRYNLPTLTDVDEIKTDNAEGSTSTSKNGTGKNQEISDNDGADKQERLRASQSAEKLQKNERSQQETQNVTKNTTVVLKAIKSVKEKNVERAQNVESCKTVDTRRLRGRGNAEESRPTIITENITEVPIASRLRSRSDNPETIVSPNSSNSNQNPPKQTQEQESNMIQIPTSTLNKVLTTVANSPNMEVFVKEATNRGTDQKDISYTVELRKKQNTESVTVLAKVFPDQGSCMVDPGIVGLLENQNGVEIRNIVNTIFNRNPKEGTANFDELEDPEEKLDASKNPKDLFRMDGEEIQVDDNVEHISMENQSSYACRICRKVYERKDKCTVHVKTHLGIKQFVCIVCRAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFRSKFDLTEHDNIHKGVKPYRCPDCGLSYHHKVSLQMHLKSHLPPQNLKCEYCSKLFPFRTRLLSHIASVHLKSRRKFRCHFCYNLYSSLSVLNEHIKSRHVATHTCNICGKTFKVASKYKAHMLQHTNPKPFICNICNNRYASKAYLNEHLLKHEGLRKHVCQKCGARFAQASHLAAHRHVHEEKKHACTVCGRKFNRQDNMKVHRRRHFEDAKKNEGKSKELRLSDKATDVSIHRNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00291816;
90% Identity: iTF_00291816;
80% Identity: -