Cnig003054.1
Basic Information
- Insect
- Cephus nigrinus
- Gene Symbol
- bab2
- Assembly
- GCA_030142395.1
- Location
- JARQSZ010000309.1:1134483-1135846[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-07 0.00027 20.8 0.1 1 40 286 324 286 329 0.87 2 2 1.5 2.2e+03 -1.3 0.0 33 42 327 336 324 337 0.85
Sequence Information
- Coding Sequence
- ATGGAATCGGGGAGCAGTTTATCCACCCCAGGCAATTACCCGGGTGGGGATCGCCAGCAGTTTTGCGTATCTTGGAATTCTCATCAGTCCAATATGCACAATGTGTTTCCCAAATTGTTGAGTTCAGAGCAATTTGTTGATGTAACCTTGGCATGCGATGGTGGTTCTATAAAATGTCACAAGGTGGTCCTGTCTGCCTGTAGTGATTATTTGGAGCGATTACTACTTGAAATTCCCTGCACTCATCCCATCATATTTTTGAGAGACATGCGTATGTGGGAATTACAAGCCCTTGTTGAGTTTATGTATCGGGGTGAAGTATATGTCGAGCAGCAACAGCTTGGCAAACTCATGCAGGCTGCCGAGGTTTTACAGaTTCGTGGCTTATCTAGTCAGGGAAGGGATAGTACTCCCAGCGAAAGTGGTTCTCCACAGACTAGCACATCCGTCTTGCCATCTACGCCCACAAAAAGCGATATGCAAAATCTTAAGAATGATGAAACACTCTCAAACGATGCAAGCAGTGCAACTTTCCTTGAGGGCACATCCAGTGTCGCTTCCAATCCATCAAGCAATTCCTCTGTCACGACAACTCCTGCTGTATCTCAAAATGCAAATTCATCAAACTTCATGAACATAGAACACACCGAAGCATTACAGCACCTGGAAAAAGCACTGAGTGCTTGCGAAGCCACTCTCACAGAAACACCAGGCATGGTCAAAATGGAGCCAGATGAACAATTTACTCAGCAACAGGGAAGCAAACCTTATTCCATTAGCATGGTACCCACCAGTAACTGCAATCCTAGCAGTCCGTTCCCTGCTATCGAAGgGTACCAAAGACGACAGCGACGTTCAGAAGAAGAATTGAAACAGGCCTCAGATATGGTGGCACGTGGAATGACGTTCCAAGTAgcatcagaaaaatataagattcCAATCAGTACAATCCGAATGTACATGGTGCGGAAGGGCATTTTACAAAGGCGAAAAAGAGGACGTGGTTCGAGCAATATCGGCGTAAACAGTCAACCAGGTAGCCCGGCCAGTCCACCTTATCATATGATGAATTATCGCCTGCCAGAGAGCCTAAACTCCAGTCTACCGTAG
- Protein Sequence
- MESGSSLSTPGNYPGGDRQQFCVSWNSHQSNMHNVFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLEIPCTHPIIFLRDMRMWELQALVEFMYRGEVYVEQQQLGKLMQAAEVLQIRGLSSQGRDSTPSESGSPQTSTSVLPSTPTKSDMQNLKNDETLSNDASSATFLEGTSSVASNPSSNSSVTTTPAVSQNANSSNFMNIEHTEALQHLEKALSACEATLTETPGMVKMEPDEQFTQQQGSKPYSISMVPTSNCNPSSPFPAIEGYQRRQRRSEEELKQASDMVARGMTFQVASEKYKIPISTIRMYMVRKGILQRRKRGRGSSNIGVNSQPGSPASPPYHMMNYRLPESLNSSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00393525;
- 90% Identity
- iTF_00293857;
- 80% Identity
- iTF_00293857;