Cfum007299.1
Basic Information
- Insect
- Cephus fumipennis
- Gene Symbol
- -
- Assembly
- GCA_030142355.1
- Location
- JARQSY010000490.1:1289515-1292466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.2 4.5e+02 2.0 0.3 1 19 304 322 304 327 0.75 2 14 9.7 8.4e+02 1.2 0.9 6 23 359 376 358 376 0.93 3 14 0.0015 0.13 13.1 0.8 2 23 382 403 382 403 0.97 4 14 2.8e-05 0.0024 18.6 1.8 1 23 409 431 409 431 0.99 5 14 0.00085 0.074 13.9 2.7 1 23 438 460 438 460 0.97 6 14 4.2 3.6e+02 2.3 0.1 5 23 469 487 468 487 0.93 7 14 0.019 1.7 9.7 6.7 1 23 493 515 493 515 0.95 8 14 1.9e-06 0.00017 22.2 4.6 1 23 521 543 521 543 0.98 9 14 1.7e-05 0.0015 19.3 2.1 1 23 549 571 549 571 0.98 10 14 0.002 0.17 12.8 2.9 1 23 581 603 581 603 0.98 11 14 3.3e-05 0.0029 18.4 0.2 1 23 610 632 610 632 0.97 12 14 0.00025 0.022 15.6 0.5 1 23 638 661 638 661 0.95 13 14 0.0037 0.32 11.9 9.3 1 23 667 689 667 689 0.97 14 14 0.0001 0.0088 16.8 1.0 1 23 695 717 695 717 0.98
Sequence Information
- Coding Sequence
- ATGGTTAACCGAAGATGTTCCGCCAAAACATGTTTCAACGAATCAATTTCGAGACCtgacttgaaattttttccattcccGAAAGCGGAACATGAcgCTCGTATTTGGGCTAAAGCTTGTGATAGACCTGAACTTATGAACAAAAGTCTAGATATACTACGCCGATATGTTCTTTGCGCTGAACACTTTGAGGATCGTTGGTTCAGTAACCCACCACACAATACAACATTTATTAAGACAGCACTTCCAATACCAACGATATTTCGGAATAATATCAAGGAGATTTTAGTTCATCAACGAAAAAACTTATCAGTATCTAATGGTGATGCTGCTGCCACAAGCGATACAACGGAACAAACGGAAACTGAGAATATGACTATGACGCAAAATTGGAGATTCAACACAGAAGCAGAATTCAATTCACAATCGgaagACAATTCGAATGAAGAGCAGAGGAATGTGGATTTAGTTATCAATGCTTCTGAAGTTAATAAAGAAGATAACACTCATAACTTCTGTAGACTATGTGCATGTTTAATACCAGCCAGTTTATTGAGCTCTATTTATGATACACACATGAAtctaaagataaataaaatattaccaaaCGAGGCTCATCTATTTAAGCACGATGGATTGGCTGAGGAATCTGATACAACCATTGTGGATATTAAAGAAGAGGATAGTGTTAACgtagaaaatgaattaaataacacTGAAATATCTTTCCAAAAAACTAAAACTGCAAGTGTAAACTCACAGAAATCGTCGTTGTCAAAATCAGTATCTTTGGATAACAATAATAGCGAAGATACAcaagaaatttctcaaattacaAAACCAAAAAGAAGTATGTTATCGGAATGTCGATCGAATTCGAACAGAATCAAGTGTCCTGAAATTACAGTATTCAAATGCATGACATGCCATGAGGAATTCCTTGATAGAAATTCTGTAGTGGAGCACAGTATAGCAATCCACGcaatcaaaggaaaaaaacacGAGGTAAAATATACGGtgactaagaaaaaaattgagaagaggagacaattaaaaaagtatcacTGGATCAGCTGCCCCTTGGAATTTACTAATTGTCAAACTTCTCGAACTCATATGAAGTGGCATCCATCAAGGAACAATACGTGCGAATACTGCGACAGATACTTCATATTACAAAGCAGATTAGAATCTCACAAACGATGGCATTTCAGTCAAAAACCATATCAGTGCAATATTTGTAACGAGTCATTCGTCTTTATTAACAGTCTTAAACGTCATAAAAAGTCTCACATGGAGGACATGTCATTGCATAAATGTAAAAGATGCAACAAGATGTTTCCCACGATAGCTCTTATGCAAAGACACACTAAAGCCCATTATGAAAAGAGGGTCTTGTACAATTTATGCAGAAAACTTTTGTCCTCTCCACAAAATGTACAATATCATCTGGCAACGCATAGCGAAGAACGATCATTTTCCTGTACGATTTGTTCAAAATCGTTCAAGACCACCAGTAAATTAAATTGTCACAATAAAAAACATCGAGTAGATCATAGATTCGAGTGTAATTTATGCGACAAGAAATTCTGTATGAAATCGTTGCTTAAACAACACATGAATACGCATTTGGGTGAGAGACCTTATGTTTGTGAAATGTGCGATTCTCGATTCAATAGGTATGGAAATCTTACTAAACATAGAAAACGACATGCGGTGTCATCAGCATTAGAATCATCATACACTTGTGATATTTGTCataagaatttgaaaactGCATTTGCATACAAGTATCATATGGTGAAGCACAGTGAAGAGCGAAAGCCATACTCTTGTGATATTTGTGAGAAACCTTTTAGGCAAATTGCACAGTTGAGAGTTCATAATAGATTGCATACTGGTGAGCGACCTTACGCCTGCACTGAGTGTGGTCAACGATTTCGGACAAAAGCAACAATGGATCAGCATTATGTAACTTTGCATACAGATAATTATCCACATGAATGTCCTTATTGCGATAAGCGTTTTAAACGACTGCATTCATTAAACTGTCATAAGAAAACTCATACTGGAGAACGTTCATACGTGTGTCGGATTTGTTATCATGCTTTTGCACAAAAAGGTGATATGTTGAAacatatgaaaatacataGTCAGAGGGACTTAGACAGCCATTTTCGAAGAGCACATaatcaattatcaaataatgaCTTTCTTGAGGAATCAACTACCGACACGGAAGATTCAGAATGGATGACAGAAGTGGATTGTAGCGAGGAGGATATAACAAATGATTATCTAATGACTGATGACGAATTGAGAactaaatacaattaa
- Protein Sequence
- MVNRRCSAKTCFNESISRPDLKFFPFPKAEHDARIWAKACDRPELMNKSLDILRRYVLCAEHFEDRWFSNPPHNTTFIKTALPIPTIFRNNIKEILVHQRKNLSVSNGDAAATSDTTEQTETENMTMTQNWRFNTEAEFNSQSEDNSNEEQRNVDLVINASEVNKEDNTHNFCRLCACLIPASLLSSIYDTHMNLKINKILPNEAHLFKHDGLAEESDTTIVDIKEEDSVNVENELNNTEISFQKTKTASVNSQKSSLSKSVSLDNNNSEDTQEISQITKPKRSMLSECRSNSNRIKCPEITVFKCMTCHEEFLDRNSVVEHSIAIHAIKGKKHEVKYTVTKKKIEKRRQLKKYHWISCPLEFTNCQTSRTHMKWHPSRNNTCEYCDRYFILQSRLESHKRWHFSQKPYQCNICNESFVFINSLKRHKKSHMEDMSLHKCKRCNKMFPTIALMQRHTKAHYEKRVLYNLCRKLLSSPQNVQYHLATHSEERSFSCTICSKSFKTTSKLNCHNKKHRVDHRFECNLCDKKFCMKSLLKQHMNTHLGERPYVCEMCDSRFNRYGNLTKHRKRHAVSSALESSYTCDICHKNLKTAFAYKYHMVKHSEERKPYSCDICEKPFRQIAQLRVHNRLHTGERPYACTECGQRFRTKATMDQHYVTLHTDNYPHECPYCDKRFKRLHSLNCHKKTHTGERSYVCRICYHAFAQKGDMLKHMKIHSQRDLDSHFRRAHNQLSNNDFLEESTTDTEDSEWMTEVDCSEEDITNDYLMTDDELRTKYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00291763;
- 90% Identity
- -
- 80% Identity
- -