Ccin005732.1
Basic Information
- Insect
- Cephus cinctus
- Gene Symbol
- bab2
- Assembly
- GCA_000341935.1
- Location
- NW:1146445-1151643[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-07 0.0003 19.7 0.1 1 39 286 324 286 338 0.92
Sequence Information
- Coding Sequence
- ATGGAATCGGGGAGCAGTTTATCCACCCCAGGCAATTACCCGGGTGGGGATCGCCAGCAGTTTTGCGTATCTTGGAATTCTCATCAGTCCAATATGCACAATGCGTTTCCCAAATTGTTGAGTTCAGAGCAATTTGTTGATGTGACCTTGGCATGCGATGGTGGTTCTATAAAATGTCACAAGGTGGTCCTGTCTGCCTGTAGTGATTACTTGGAGCGATTACTACTTGAAATTCCCTGCACTCATCCCATCATATTTTTGAGAGACATGCGTATGTGGGAATTACAAGCCCTTGTTGAATTTATGTATCGGGGTGAAGTATATGTCGAGCAGCAACAGCTTGGCAAACTCATGCAGGCTGCCGAGGTTTTACAGattCGTGGCTTATCTAGTCAGGGAAGGGATAGTACTCCCAGCGAAAGTGGTTCTCCACAGACTAGCACATCCGTCTTGCCATCTACGCCCACAAAAAGCGATATGCAAAATCTTAAGAATGATGAAACACTCTCAAACGATGCAAGCAGTGCAACTTTCCTTGAGGGCACATCCAGTGTCGCTTCCAATGCATCAAGCAATTCCTCTGTTACGACAACTCCCGCTGTATCTCAAAATGCAAATTCATCAAACTTCATGAACATAGAACACACCGAAGCACTACAGCACCTGGAAAAAGCACTAAGTGCTTGCGAAGCCACTCTCACAGAAACACCAGGCATGGTCAAAATGGAGCCAGACGAACAATTTACTCAGCAACAGGGAAGCAAACCTTATTCCATTAGCATGGTACCCACCAGTAACTGCAATCCTAGCAGTCCATTCCCTGCTATTGAAGgGTACCAAAGACGACAGCGACGTTCAGAAGAAGAATTGAAACAGGCCTCAGATATGGTGGCACGTGGAATGACGTTCCAAGTAGCATCAGAAAAGTATAAGATTCCAATCAGTACAATCCGATTTTACATGGTGCGGAAGGGCATTTTACAAAGGCGAAAAAGAGGACGTGGTTCGAGCAATATCGGCGTAAACAGTCAACCAGGTAGCCCGGCCAGTCCACCCTATCATATGATGAATTATCGCCTGCCAGAGAGCCTAAATTCCAGTCTACCGTAG
- Protein Sequence
- MESGSSLSTPGNYPGGDRQQFCVSWNSHQSNMHNAFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLEIPCTHPIIFLRDMRMWELQALVEFMYRGEVYVEQQQLGKLMQAAEVLQIRGLSSQGRDSTPSESGSPQTSTSVLPSTPTKSDMQNLKNDETLSNDASSATFLEGTSSVASNASSNSSVTTTPAVSQNANSSNFMNIEHTEALQHLEKALSACEATLTETPGMVKMEPDEQFTQQQGSKPYSISMVPTSNCNPSSPFPAIEGYQRRQRRSEEELKQASDMVARGMTFQVASEKYKIPISTIRFYMVRKGILQRRKRGRGSSNIGVNSQPGSPASPPYHMMNYRLPESLNSSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00393525;
- 90% Identity
- iTF_00293857;
- 80% Identity
- iTF_00293090;