Ccin007828.1
Basic Information
- Insect
- Cephus cinctus
- Gene Symbol
- bab2
- Assembly
- GCA_000341935.1
- Location
- NW:1455158-1476851[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.5e-13 6.7e-10 37.8 0.0 1 39 313 352 313 356 0.90 2 4 1.7e-12 2e-09 36.3 0.1 2 39 368 405 367 408 0.94 3 4 6.2e-19 7.4e-16 56.9 0.0 2 45 423 467 422 467 0.97 4 4 7.1e-19 8.5e-16 56.7 0.1 1 42 474 516 474 517 0.97
Sequence Information
- Coding Sequence
- ATGGCCGGGCAGCATTACTGCCTGCGCTGGAACAACTACCAGTCGAATATGACGTCCGTCTTTCATCAGCTCCTACAGACAGAGGCCTTCGTAGACGTGACCCTAGCCTGTAACGAAGCATCGTTAAAAGCGCACAAGGTCGTCTTGTCAGCATGCAGTTCCTATTTTCAAAAGTTATTGCTCTCCAATCCCTGCAAACATCCGACGATCATCATGCCGCAGGACGTGTGCTTCAATGATCTCAAGTTCATCATCGAATTTGTCTACAGAGGAGAGATCGACGTGTCCCAGGCAGAGCTTCAGTCCCTGCTCAAGACAGCCGACCAGCTGAAGATCAAGGGGCTCTGCGAAGTGCCAGAGAGCAAGGACGGTCCACCATCGGTCAGTCTGAGCTCACCAGGTATAGAGCCAGGCACACCGCGGCTCAACTACACCAAACTGAAGAGGCACCATCCCAGGTACAAGAGACCCAGGTTCGAGCCCCGAACCGACTCCAGGCACTACGAGCAGTATAAAGAGGAAGAGGCCACCGAGGCCTTCGGTCGTGACGATAAGGAGAATCACAGAGGCTGGCAGACCGAGGATGAGGAGTGCGCGGAGGCCGCAGTAGTCCTGGAGTCCTGCCAACGTGACAACAACAACGGTAACAGTACAAATAACAATAACGATATCCAGAATTGCGACAGTGTCAAGATCAAGTTCGAGACTTTGCACACGATGGATTCCTCGGATACGATCGATATCGATAGCCACATGTCGGACAGGGCGAGTGTGAGTTCGAAGAACGCTGTGGATAACGATAATATGATGATGATCACGCCAGAATTATTGGGCCTCATGCCGTCGGGAAGTTCGGTACATTCGGATTCCGGTGAGACTAATGCGAGGGGGCACTCGGGTCAGTCTGGCTCGCATCATCATGGTTCCAAGTCTTGGACGCAGGAGGACATGGACGCGGCATTGGAGGCCCTTAGGAATCACGATATGAGTCTTACAAAAGCATCAGCAACATTCGGTATACCATCTACGACCTTGTGGCAGCGTGCTCATCGTCTTGGGATTGATACTCCAAAAAAGGATGGGCCTACCAAATCTTGGAGCGACGAGAGTCTGAACAACGCGCTGGAGGCACTCAGGACCGGTACCATCTCGGCTAACAAGGCTTCAAAGGCCTTTGGCATTCCCTCGAGCACCCTGTACAAAATTGCTAGGAGAGAGGGGATCAGATTAGCTGCTCCCTTCAACGCGAGCCCCACTACTTGGTCTCCTGCCGACCTGGACAGAGCCCTCGAGGCAATAAGGTCCGGTCAGACGTCGGTGCAAAGAGCTTCGACCGAATTTGGAATTCCTACAGGAACTCTCTACGGGAGATGCAAGAGGGAAGGCATCGAGCTCAGCAGAAGCAATCCGACGCCTTGGAGCGAAGACGCCATGACGGAGGCTCTGGAAGCTGTTCGACTGGGTCACATGAGCATCAACCAAGCAGCCATTCACTATAATTTACCATATTCGTCCCTTTATGGACGATTCAAGAGAGGGAAGTACGAGGAACCTGTTGTCAGTGAAATGTCTCAAGATGGCGGCAGCCCTCACTATCATCAGAGTCCTAATCAGAATCACTCCACTTCTCTTCCCGATCAAATGCCCTATCAGGGCAGCTGA
- Protein Sequence
- MAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPGIEPGTPRLNYTKLKRHHPRYKRPRFEPRTDSRHYEQYKEEEATEAFGRDDKENHRGWQTEDEECAEAAVVLESCQRDNNNGNSTNNNNDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAVDNDNMMMITPELLGLMPSGSSVHSDSGETNARGHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEMSQDGGSPHYHQSPNQNHSTSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00292363;
- 90% Identity
- iTF_00292363;
- 80% Identity
- iTF_00292363;