Cbra006338.1
Basic Information
- Insect
- Cephus brachycercus
- Gene Symbol
- -
- Assembly
- GCA_030142315.1
- Location
- JARQSX010000462.1:121310-125044[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00024 0.018 15.6 1.4 1 23 182 204 182 204 0.97 2 20 2e-05 0.0015 19.0 0.4 2 23 211 233 211 233 0.96 3 20 0.00088 0.065 13.9 3.9 1 23 239 261 239 261 0.96 4 20 0.053 3.9 8.3 0.4 1 23 265 287 265 287 0.97 5 20 5.2e-05 0.0038 17.7 1.0 2 23 294 315 293 315 0.97 6 20 3.2e-05 0.0024 18.4 0.2 1 23 321 343 321 343 0.98 7 20 0.18 13 6.6 0.9 1 23 349 371 349 371 0.97 8 20 6.1e-07 4.5e-05 23.8 0.2 2 23 378 399 377 399 0.97 9 20 1e-06 7.5e-05 23.1 0.6 1 23 405 427 405 427 0.98 10 20 6.2e-06 0.00045 20.6 0.6 1 21 433 453 433 454 0.96 11 20 7.8e-05 0.0057 17.2 1.2 2 23 623 644 622 644 0.96 12 20 7.2e-07 5.3e-05 23.6 2.5 1 23 650 672 650 672 0.98 13 20 0.00016 0.011 16.2 0.1 1 23 678 700 678 700 0.97 14 20 0.0025 0.18 12.5 3.2 3 23 708 729 707 729 0.95 15 20 3.1e-06 0.00023 21.6 0.8 1 23 734 756 734 756 0.96 16 20 2.1e-06 0.00016 22.1 0.7 1 23 766 788 766 788 0.98 17 20 1.7e-05 0.0012 19.3 1.1 1 23 794 816 794 816 0.98 18 20 1.1e-05 0.00079 19.9 0.5 2 23 823 844 822 844 0.97 19 20 5.8e-05 0.0043 17.6 1.7 1 23 850 872 850 872 0.99 20 20 0.00024 0.018 15.6 0.1 1 21 878 898 878 899 0.95
Sequence Information
- Coding Sequence
- ATGATCTTGGACGTGAGAGATTCCTTGGCCGAAGGTTCTAGCTGTCATCCGGTTAGAGCGTTCGAGCGCACTGATCACTCCGTCCTTGCTTTCAGGTGTGCAGCGGACTTCCACGAAGCCCTGACCAAGGTTGAGCCCGATCAGGACATTCTCGAGGAGAATCAATTTGGAAACGTTATCGTCGGTGACAGCATTAgtaacagcagcaacagcagcagcagcagcagtagcagcagcaacatCGGCGACGGCGACGGCTGTAGCAGCAACAATAGCGGCAGGATATATCCGGTCGTTGTGGCCGGTTTCGACAATATCGAGCAAGAGGAGCAGCAGGAGCAGGTGGCAATTCTGTCGGAAACTCAGGAGGCCGAgatggaggaggaggaggttgaggaggaggaggaggaggaggagtaCATTCTAGAAGCGGGGGAGATCAAGTTGGAAGGAGGAGAAACGAGCGACACGGAGAGACGTGATCGAAGAAGAACGCGAGAGAAATTCGCGGAAAGAAAGTTAATCTCAGGATGTCAGGAAAGCTACGAGTGCGACATATGCGGGAAAagggttaagaaaaaaatgcaattccTGAAGCACAGAGAAAATCACGAGAGAAGGAGCAACGGGCGGTGCGCCGAGTGCGACAAGGTCTTCACTGACGAGGAGAAGCTGCAGAAGCACAGGATCAAGGTGCACCAGCAGGAAAGACCATTTCAGTGCATTCTTTGTGGCAAGTGCTTCAAGACCGAGGAATTTCTCAAGACTCACCTGAAGCAGCACAATAAGCGATTTACGTGTGACATATGTGGCATCTCGAAGGTGTCTGGGTACGATTTGCGACTTCACAAGAAGAAGCACAATCAGGAGTACGTGACCTACTGCGAGACTTGCAACAAGGGCTTCTACACGAATCAAACGCTCGAGCGCCACGTGCTCACGCACACTGGGGAGAAACCGTTCGTTTGCAAAATTTGCAAGACGCCTTACGCGAGTGCAGCATACCTGAACATGCACATGAAATCTCACGGCGAGCGGGAGAAGCACAAGTGCAGCATATGCAACTTCGAGAGCTATTGGAAGGCAGCGTTGAAGGTCCATCTGAAGATTCACACTGGAGAGAATCAGATAACTTGCGAGATATGCGGAAAATCCGTATCGAGCAAGACGTATCTGCAGATTCACATGCGCATCCATTCGGGTGAGAAACCTCACGTTTGTGAAGTATGTGGGAAGGCCTTTAGTGTCCGCAAGTACCTCATCGTCCACCTGAGGACGCACACAGGGGAGCGGCCCTACGAATGTAAACTCTGCCAAAAAAGATTCACGCAGCAGGGATCACTTAATTCGCACATCAAattaatCGATGGGAAGAAGTCCTCTAATCCGTTGGAGCAAAGGAACGGAATACTACTGTCGGAAAGTTCTTCGGCCCCAGAGACCACCGGGGCTAATGACCAGGGCAGCCCGAGTGCACGCGGAACCAAGAGCTTCTCCGTTCCCGCTTACGCCACGCAGTCGGGAACGTCGACACATGTCGAGAAGGATTCATGCGCTGAAGAGGACGAGACTCACCCAACACCTCGTGACTCGACCGAATCACAGCCGCCGGCATACTACGCGATATTCGCTGGAGCTTTAAAGGATGTGGACAGCGTGTTCTATCCTCCACAGCGAGAGTACGACGACGCTCACGATGTCTATGAGCGTAATGAGGACTTGAAGATACCGGTTGACTTCAGTCCGTCGCACGAGGCGCAAGCTTGTTTGGATGCTGCGAGGCAGCCACTAAATACTGACTTGGATGGAAGAGGCAGGACCAAGGGCCTCAAGGCTGACCGAAATTCCGATCCGGAAAACAGGTTGAAGTGCGAGGAGTGCGATCGCGTTTGCGTAAACAAGGAACTCCTGAGAAAGCATAAGATCGTCCATAGCACAGTCTTCCGGCACGAGTGTCAAATCTGCggaaagaaattcaaacgGTCGACCGAGCTCAAGATACACGGGAGGACGCACTCCTCCGAAAGAAATTTCGCGTGCGAGCTCTGCGGCAGTGCTTTCAAGCTGAAGTCTCAGTTGGTAGCCCACGCTAGGCGACACACGGCCGATTACAGGGTCTTCTGCAAGCTCTGCGGCAAGGGCTTCCACAATAACAGTGACTACCAGTCTCACAACAAAGTAAAGCACGTTGCCAAGGAACATGCGTGCCCATCCTGTGGGAGGTCCTACAGGGAAGCATCCCTCCTTCGCCGCCATCAGAGAATCCACCAGCCGGATTACGTGCCGGACAAACGGTTTCAGTGTGAGATTTGCGGCAAGACGTTTGTTCTTCGCAAGTCCCTCGAGATGCACTTGAAAAGTCACACAGGAGAGAAAAGATACAAGTGTGACGTTTGTGGCAAAGGACTCTGCACGAGGTCCTCCCTCCTTGATCACATAAAACTTCATACCGGGCAGAAGCCGATCGTCTGCGACCTGTGCGGACGCGCCTTCACTAAAAGATCCACGATGATGGTGCACAGAAGGACTCACACCGGTGAACGACCGTATCGATGCAACGTGTGCAATAACTCTTATACGCAGAGGACGAGCTTGGTTATTCATCAACGTTATCATTCCGGTGAACGGCCATATATTTGCAAACTATGTTCGAGAGGATTCGTTTCCAGTGCGCAGCTCAGAGTCCACCAGAACTCTTGCCGATGA
- Protein Sequence
- MILDVRDSLAEGSSCHPVRAFERTDHSVLAFRCAADFHEALTKVEPDQDILEENQFGNVIVGDSISNSSNSSSSSSSSSNIGDGDGCSSNNSGRIYPVVVAGFDNIEQEEQQEQVAILSETQEAEMEEEEVEEEEEEEEYILEAGEIKLEGGETSDTERRDRRRTREKFAERKLISGCQESYECDICGKRVKKKMQFLKHRENHERRSNGRCAECDKVFTDEEKLQKHRIKVHQQERPFQCILCGKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNQEYVTYCETCNKGFYTNQTLERHVLTHTGEKPFVCKICKTPYASAAYLNMHMKSHGEREKHKCSICNFESYWKAALKVHLKIHTGENQITCEICGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKLCQKRFTQQGSLNSHIKLIDGKKSSNPLEQRNGILLSESSSAPETTGANDQGSPSARGTKSFSVPAYATQSGTSTHVEKDSCAEEDETHPTPRDSTESQPPAYYAIFAGALKDVDSVFYPPQREYDDAHDVYERNEDLKIPVDFSPSHEAQACLDAARQPLNTDLDGRGRTKGLKADRNSDPENRLKCEECDRVCVNKELLRKHKIVHSTVFRHECQICGKKFKRSTELKIHGRTHSSERNFACELCGSAFKLKSQLVAHARRHTADYRVFCKLCGKGFHNNSDYQSHNKVKHVAKEHACPSCGRSYREASLLRRHQRIHQPDYVPDKRFQCEICGKTFVLRKSLEMHLKSHTGEKRYKCDVCGKGLCTRSSLLDHIKLHTGQKPIVCDLCGRAFTKRSTMMVHRRTHTGERPYRCNVCNNSYTQRTSLVIHQRYHSGERPYICKLCSRGFVSSAQLRVHQNSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -