Chyl007475.1
Basic Information
- Insect
- Cephonodes hylas
- Gene Symbol
- -
- Assembly
- GCA_030295005.1
- Location
- AP025367.1:919501-928301[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.72 52 5.0 0.7 3 23 323 343 323 343 0.86 2 33 3.7e-05 0.0026 18.5 0.7 1 23 349 371 349 371 0.96 3 33 7.1e-06 0.00051 20.8 0.1 1 23 377 399 377 399 0.96 4 33 5.4 3.9e+02 2.3 3.9 1 23 410 432 410 432 0.93 5 33 5.4 3.9e+02 2.3 3.9 1 23 439 461 439 461 0.93 6 33 5.4 3.9e+02 2.3 3.9 1 23 468 490 468 490 0.93 7 33 5.4 3.9e+02 2.3 3.9 1 23 497 519 497 519 0.93 8 33 5.4 3.9e+02 2.3 3.9 1 23 526 548 526 548 0.93 9 33 5.4 3.9e+02 2.3 3.9 1 23 555 577 555 577 0.93 10 33 5.4 3.9e+02 2.3 3.9 1 23 584 606 584 606 0.93 11 33 5.4 3.9e+02 2.3 3.9 1 23 613 635 613 635 0.93 12 33 5.4 3.9e+02 2.3 3.9 1 23 642 664 642 664 0.93 13 33 5.4 3.9e+02 2.3 3.9 1 23 671 693 671 693 0.93 14 33 5.4 3.9e+02 2.3 3.9 1 23 700 722 700 722 0.93 15 33 5.4 3.9e+02 2.3 3.9 1 23 729 751 729 751 0.93 16 33 5.4 3.9e+02 2.3 3.9 1 23 758 780 758 780 0.93 17 33 5.4 3.9e+02 2.3 3.9 1 23 787 809 787 809 0.93 18 33 5.4 3.9e+02 2.3 3.9 1 23 816 838 816 838 0.93 19 33 5.4 3.9e+02 2.3 3.9 1 23 845 867 845 867 0.93 20 33 5.4 3.9e+02 2.3 3.9 1 23 874 896 874 896 0.93 21 33 5.4 3.9e+02 2.3 3.9 1 23 903 925 903 925 0.93 22 33 5.4 3.9e+02 2.3 3.9 1 23 932 954 932 954 0.93 23 33 5.4 3.9e+02 2.3 3.9 1 23 961 983 961 983 0.93 24 33 5.4 3.9e+02 2.3 3.9 1 23 990 1012 990 1012 0.93 25 33 5.4 3.9e+02 2.3 3.9 1 23 1019 1041 1019 1041 0.93 26 33 5.4 3.9e+02 2.3 3.9 1 23 1048 1070 1048 1070 0.93 27 33 5.4 3.9e+02 2.3 3.9 1 23 1077 1099 1077 1099 0.93 28 33 5.4 3.9e+02 2.3 3.9 1 23 1106 1128 1106 1128 0.93 29 33 5.4 3.9e+02 2.3 3.9 1 23 1135 1157 1135 1157 0.93 30 33 5.4 3.9e+02 2.3 3.9 1 23 1164 1186 1164 1186 0.93 31 33 5.4 3.9e+02 2.3 3.9 1 23 1193 1215 1193 1215 0.93 32 33 0.00047 0.034 15.0 1.2 1 23 1222 1244 1222 1244 0.96 33 33 0.0005 0.036 15.0 0.3 1 21 1249 1269 1249 1273 0.90
Sequence Information
- Coding Sequence
- ATGCGTACGTACATGCGAAGGCGTCCTTATATACAAGGCGTGATAGAAGGTGTGCACAAATTGTGCCGCCTTTGCCTACAAGAATCCGAAGAAATGTTACCCATATTTGACGAAGATTCCGATGGTATATGCGCTACATTGTCGTTACGGATTATGATATGTGTTGGATTACAGATTATAAGGGATGACAACCTTCCAAATACAATATGCTCAACTTGTAACAAAGAACTGGAGAGGTACTATATATTCAGGAAAAAATGTGAAGTATCATATCAAAAGCTAAAACTCCACCTTCAAGCAATAAAAGAGAAAGAAAGGTTGCGTAAAGCAATAGAAGAAAAAGAGctagaagaagaaataatgaTCAAACAGGAAGTTGTTAACAATAATCCAGACAATGAGTctgaaaatataagtaaatatgtatTAGATAAGAACCAGTTTTCTGAAATACAATTGTTGGATTTAAATGGATTGGCCAATGTAAATTTGcaAACTGAAAAcatacaagaaaataataacataccTGCAGAACTAGCAAATTATGTTGAAAGTAAAGAAATTGagaCACAAATTGAAGATGCTGATAATCCTGAAATATCATCATTCTTATCAACAGTATTAGTTCAGTTAGGCATACTGGGACAGCAGGATGAAACACTTTCCGTACTAGAGAATGGAGTTAACGATATAGAGCTTATGATGGGAGATGATGACGCAGTTGTCTTGGAACTAGCAGAAGAGGATGATGATgACAGCATGGAAACTAGTCAAGCTATTGAAGTAGGAAGCAGTTTACAGCCAGTAGATATAAAAAGCATAGCTGTTGAGAACTTGAATGACAACCTAAGCAAGAACAGTTATGGAACATTGGCAAATAGTGAGGTTGAAGAGCAAGTAATGACAATAAAATGGAAGCCGGAGGAGGTGGGCAGTGTCccgggcgggggcggcgggcgcgcgtgGTGCAGCGCGTGCCGCAAGTGGCTGGCGTCGCGCGGCACGCTGCGGAGACACCTGCGGGTGCACACCGGGGAGAAACCCTTCGCCTGCAAGGACTGCGGGCGGCGGTTCGCGCAGCGGGAGGTGCTGCAGAGACACAGATTCGTGCATTTAGAGCATCGTCCGTTCGCGTGCGAGGTGTGCGGCAAGAGCTTCACTCAGCGCGGCGCGCTCCTGTCGCACGCACGCGCACACCCGCCGCCGCACGCGCGCGCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTACGtactcacatacacacacacacacccgcgCGCTGCAGCTGCACGCCTGCACGCGCTGCCCCAAGGTGTTCCTGTACGCCTCCAGTCTGAGTCGGCACATGATGATGCACAGAGGACGGACATACGCTTGCGGCGCGTGCCAGCGGCAGTTCCGCGACAAGAGCTCGCTCATTCGCCACCTGAAGGGCAACGCGCACGCCAACCACGCCGCCGAACTGCAACACGCCGACAAACTCGCCGACGAACACGCGCACGAACTCACCAACGAACCCGATGTGGACTGA
- Protein Sequence
- MRTYMRRRPYIQGVIEGVHKLCRLCLQESEEMLPIFDEDSDGICATLSLRIMICVGLQIIRDDNLPNTICSTCNKELERYYIFRKKCEVSYQKLKLHLQAIKEKERLRKAIEEKELEEEIMIKQEVVNNNPDNESENISKYVLDKNQFSEIQLLDLNGLANVNLQTENIQENNNIPAELANYVESKEIETQIEDADNPEISSFLSTVLVQLGILGQQDETLSVLENGVNDIELMMGDDDAVVLELAEEDDDDSMETSQAIEVGSSLQPVDIKSIAVENLNDNLSKNSYGTLANSEVEEQVMTIKWKPEEVGSVPGGGGGRAWCSACRKWLASRGTLRRHLRVHTGEKPFACKDCGRRFAQREVLQRHRFVHLEHRPFACEVCGKSFTQRGALLSHARAHPPPHARALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSTYSHTHTHTRALQLHACTRCPKVFLYASSLSRHMMMHRGRTYACGACQRQFRDKSSLIRHLKGNAHANHAAELQHADKLADEHAHELTNEPDVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -