Chyl021173.1
Basic Information
- Insect
- Cephonodes hylas
- Gene Symbol
- -
- Assembly
- GCA_030295005.1
- Location
- AP025386.1:6518606-6521620[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0062 0.45 11.5 2.6 1 23 252 275 252 275 0.95 2 17 3.5e-05 0.0025 18.6 2.5 1 23 280 302 280 302 0.99 3 17 0.055 3.9 8.5 0.3 1 23 332 355 332 355 0.93 4 17 0.0015 0.11 13.4 0.6 2 23 416 438 415 438 0.96 5 17 5.4e-05 0.0039 18.0 1.5 1 23 444 467 444 467 0.94 6 17 0.15 11 7.2 0.2 3 21 472 490 471 491 0.91 7 17 0.0023 0.16 12.9 0.3 1 22 499 520 499 522 0.89 8 17 0.15 11 7.2 0.2 1 23 527 550 527 550 0.94 9 17 0.0013 0.095 13.6 0.2 2 23 563 584 562 584 0.95 10 17 0.42 30 5.7 1.2 1 23 590 612 590 612 0.97 11 17 8.4 6e+02 1.7 0.2 2 9 617 624 616 626 0.87 12 17 0.00019 0.014 16.3 2.6 1 23 647 669 647 669 0.96 13 17 0.0082 0.59 11.1 0.1 2 23 673 693 672 693 0.96 14 17 0.77 55 4.9 3.3 2 23 708 730 707 730 0.96 15 17 0.0012 0.087 13.7 3.2 1 23 736 758 736 758 0.98 16 17 0.00013 0.0092 16.8 4.8 2 23 765 786 764 786 0.96 17 17 0.0012 0.087 13.7 1.4 1 23 792 815 792 815 0.96
Sequence Information
- Coding Sequence
- ATGGAGACCATAGAAATTCAGGAGAGTGAGGAGCCTATAAAGTTGCCCTCGTCTGCAGAAAAGGCACAAGTAGAATGGCTCAAAGAGAAGTTAATGTGCCTGTGGGACAGTGCCCAATTCTGCGGGATGTGTTTGGACAACACCAGAAGTCTCAACTTGCTTGATAAAGAGTTTGTCATCGGCAGACAAAAGGATTCACAATcgcttttagatattttgaaTTATGTGTTTAATGAGGATATTGAAAGTATAATGGCAAGCACTCTATTGTGTGATACATGCACAGAAAAGACCATAcagtcatatttatttataaggaatACTAAGCAGTTATCGAAAATCATAAACAACTGTGTAATGGACATATATTGCAAAGTTGTGGATGTTAGCGAACAAGTCCTGGATAACTATTTTTGTGACAATGCGAATATTATGATTGTCTTAGAAAATGACATGGAAATGTTTGATGAGATTGACAACCTCACAGCGGTCACTGAAATTATACCAACAGATCAACCAATTTTAACAAAGCATGTGGAACAGGTACCAGAAACTCCTGAAGAATCTCCCAAAGAAGGCTTTGAGGATAATGAGAAAGAAATAGCAGTAACAAAAGTTCCTTTGACAAAGGAAAAATTATTCCCAAAACCAATAAGAGTTGATGGTACACCAAATATAACATTAGAAAAAGGCAAAATTGTCATCAAACCGATAAAGACTTTAACATCAAGATCAGTCCCAAGTTATACCACTTACAAGTGTAATCATTGTCCTGACATATTTACGACTTACCGATCTTTGAAAGAACATGAAAAAGCTAAGCATCGGTTCCAAATTTTCCAATGCAGGCTCTGTGAGAAGTCTTACAATACACAGCAATCTTTGAATGTGCACTACAAAACACATTCTAAAGCTCGCTGCAAGATTTGCCAAGTGTTGCTGAAAGAAGAGGACTTGTTTACACATTTAAGACAAGCTCATATAAATACTGTGTACCCCTGCCAGTTCTGTGAACTTGTATACTACACCCAAGAAGCTTTGGATACTCATTTCAAAGCTAGCCACCTTGTAAATGACACATCTGCAAAGTCACAATGTGTAATGTGCCTGAAAGAAATAAGCAAAGCCGAATTAAAAACCCATAAATGCAAATTTAGTTGCCCAGATTGCTTTGTTATGCCGTGTATACACTACAACTATTTGGTATCTTACAGGCAGCAAATTTTGAACCACTCTGCTAAAGTGGTTTGCACTGATTGTGACTATGTCACTCATAGAAAAGAATATCTCATAACTCATGTGAATAGGGAGCATTTGGACCACCATCCATTCACTTGTAATGATTGTGGAATGCAATTCTACACTAAAATGAGTTTGAAAACACATATAGATCAATACCACATTGACAACATATGTGAATACTGTGATACAGAATTCAAGAAACGGAACATTCTTACAGAACATCGGAAGGTTTGCAAAAATGTCATTCGAGCATATAATTGCGATAAATGCCCAGCTTCATTTGATGTTCAAGAAGAACTTACAAAACATGAGTTTCTTAGACACAGCGATGGCGGTTTCGCTTGCAAATTGTGTAAGCGAAGATTTTTGGAAGAAGTACAACTGGAAGAGCATCAAGTAACTGCGCATAGCAGTGTGCAATGcaagaaaagaagaaaaaatatcgaATGTACTTTGTgcgatattaaatttaacaatgtcaaaGAGTTGGAACAGCATCAAGAGTTACATGAACCAGATACTGTATTTCCTTGTAAGACTTGTGCGAAAGAATACCTCAGTTTGAAGAAATTATATGTTCATCAGCAACGGCATTATGATAGGATACAATGTCCTGGCTGCAAGAAAAGAGTTATTGTTGGTTTCTACCCCCAACATGCTGTACGGTGCCTATACAACAGAGACAGTGGAATGTCACATATTTGTGAAGTGTGTGGCAAGTCATTCCATCTAGAATCATTGTTAAAAATCCATCAAAAGAATCATGAAAAGATTGAATGTTCAGAGTGTGGCAAGATTGTAAAAGCTTCTAACATGGAAAAGCATTTGAAAGGCCATTATAAATTTGTAAGTAGTGAAAAGAAAATAGGACCCAAGATAGAATGCAACATCTGTGGCCACTTGATGCGGAAGAAATGTGATTTGGACACCCATATGAACCGATATCACTTGAAAGTGAAACCGTATGCATGCCACATTTGCTCTAAAAGATTTTGTGGAAAAGTAAGGCTGAATGAACACTTAGCAACACACACATCGGACAATGAATGCTTTTGTTCAATATGTGGCAAGAAGTTTGCAAACAGAGTTTGTTTGAAGATGCATTTGCGCATTCACACAGGAGAATGCCCATATACATGTGATGTTTGTGGTGAAAAATTCCGGTCATCAAGCATTATGAAGACGCATAGActtaaaaaacatttagatAAAACAGTAGCATGCCCATCTTGTGACAGTATGTTCCATATAGTGAGAGAGATGAGACACCATTTCAAACATGTTCACTGGAAAGATAAGAATCGACCATTCAATTACAAAGAAGCAGTACCAAAGGAATACTATCATTTATTTGAAGATGGTAGACTACCTAAAATTGATTCGGAAGTTGTAATAGAGTCATAG
- Protein Sequence
- METIEIQESEEPIKLPSSAEKAQVEWLKEKLMCLWDSAQFCGMCLDNTRSLNLLDKEFVIGRQKDSQSLLDILNYVFNEDIESIMASTLLCDTCTEKTIQSYLFIRNTKQLSKIINNCVMDIYCKVVDVSEQVLDNYFCDNANIMIVLENDMEMFDEIDNLTAVTEIIPTDQPILTKHVEQVPETPEESPKEGFEDNEKEIAVTKVPLTKEKLFPKPIRVDGTPNITLEKGKIVIKPIKTLTSRSVPSYTTYKCNHCPDIFTTYRSLKEHEKAKHRFQIFQCRLCEKSYNTQQSLNVHYKTHSKARCKICQVLLKEEDLFTHLRQAHINTVYPCQFCELVYYTQEALDTHFKASHLVNDTSAKSQCVMCLKEISKAELKTHKCKFSCPDCFVMPCIHYNYLVSYRQQILNHSAKVVCTDCDYVTHRKEYLITHVNREHLDHHPFTCNDCGMQFYTKMSLKTHIDQYHIDNICEYCDTEFKKRNILTEHRKVCKNVIRAYNCDKCPASFDVQEELTKHEFLRHSDGGFACKLCKRRFLEEVQLEEHQVTAHSSVQCKKRRKNIECTLCDIKFNNVKELEQHQELHEPDTVFPCKTCAKEYLSLKKLYVHQQRHYDRIQCPGCKKRVIVGFYPQHAVRCLYNRDSGMSHICEVCGKSFHLESLLKIHQKNHEKIECSECGKIVKASNMEKHLKGHYKFVSSEKKIGPKIECNICGHLMRKKCDLDTHMNRYHLKVKPYACHICSKRFCGKVRLNEHLATHTSDNECFCSICGKKFANRVCLKMHLRIHTGECPYTCDVCGEKFRSSSIMKTHRLKKHLDKTVACPSCDSMFHIVREMRHHFKHVHWKDKNRPFNYKEAVPKEYYHLFEDGRLPKIDSEVVIES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00429369;
- 90% Identity
- iTF_00787984;
- 80% Identity
- -