Chyl011425.1
Basic Information
- Insect
- Cephonodes hylas
- Gene Symbol
- -
- Assembly
- GCA_030295005.1
- Location
- AP025372.1:1429219-1439190[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0088 0.64 11.0 1.6 2 23 34 55 33 55 0.94 2 12 4.8e-06 0.00035 21.3 2.6 1 23 93 116 93 116 0.97 3 12 0.00048 0.034 15.0 0.4 1 23 118 140 118 140 0.98 4 12 4.1 3e+02 2.6 1.3 1 20 149 168 149 171 0.69 5 12 0.17 12 7.0 0.0 1 23 176 198 176 198 0.97 6 12 9.8e-06 0.00071 20.3 0.1 1 23 285 308 285 308 0.92 7 12 0.05 3.6 8.7 1.2 1 23 336 359 336 359 0.96 8 12 0.0059 0.42 11.6 0.2 3 23 366 388 365 388 0.96 9 12 0.0068 0.49 11.4 0.1 1 20 420 439 420 442 0.92 10 12 0.00014 0.0099 16.7 0.3 1 23 448 470 448 470 0.98 11 12 8.8e-06 0.00063 20.5 3.9 1 23 476 498 476 498 0.96 12 12 1.6e-05 0.0012 19.6 0.7 1 23 504 527 504 527 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCCACTTTTCAAATGGCATCAAACGAGGTGATCGATCTCAATCAGTTATGCAGTCTTCCGAAGCCGACCACGATAGACTTAATTGGCGGCATATACTGCCACATCTGTCAGATCACATTCGATTCAAAGAAGCAGTACGATAGTCACTACGCGCAGCACATTACTGGCGAGCAGGAGATTGTGTACACCTGTGTTGTATGCCGCAAGCAAATCACTGGCTATCCGAGCTTCCGCGGTCACTGTTACCTCCAGCACGTCACCAAGGATAAGTTCAAATGTGAACATTGCTCCaaagtattttcaaaattatcatCACTAAAACAACATGTGGCTACCATGCACGTCTTTACATGCGCATCATGCAACCAACAATTCCCAACAAAAAATGAATTGCGATTGCATCAAATTGTTCACAAAATCAAAAAGTCAAAGCCTTTCCATCAATGCAACAAATGTGGTCAGAACATTGACACTGTAGACATGTGCGAGCTGCATATTGAAGAGCACAGCACCACCGAGTACCCATGTTCTATTTGTGAAGAGATATCGCCCAACAAGCCGGAAGCAATACAACATTTGTCTAAACATTTTGGCGAAGTACTTATTAAGAACGAAATTCAAGAAGAAACAAACCCATTAAACGAAGATTCATCTATTGACATCATAGGCGGCATTCTGTGCTGCTTCTGCAATGAATTGTTCAAAAACAGAATTGATTTTGACCTACACTTCGTGACTGAGCATGGAGATAAAACTTTGGTCTATACATGCATCATTTGCAAGAAACAATACGAAAAGTATGGCCAGTTTGGTAATCACTGCCATTTCCACATCTCCAAGGACAGTTTTGAGTGCGACGAGTGCGGCAAGACGTTCCCGCGGctgtcgctgctcgtcgtgcacACCGAGGCGTTCcacgggggcgcggggggcgcggggggcgcgggggcggcggggcaGCGGGCGCGGCACGGCGTGGGCGAGGTGGGAGAGAAGCCGTTCTCGTGCACGATGTGCGGGCACCGGTTCGGGTCGGGCCCGCGGCTGCACGAGCACTGGCGCGTGGCGCACGGGCGGCAGCGCGCGCCCTGCCCCGAGCGCGGCTGCTCGCGCAGCTTCCCCTCGGTGCACGCGCTGCTGCTGCACGCGCGCACGCACCGGCCGGCGGCGCGCGCGTGCCGGCACTGCGGGCTGGCGCTGGCGGCGCGCGAGGCGGCCGAGCGGCACCTGCCCGTGCACCGCATCAAGCACTACGCGTGCCCCGTGTGCGCGCGCGCCTACCGCGAGAAGTACCTGTTGCTGAAGCACATCCCGCGCCACTTCGAGGTGGTGCTGCACGTGTGCCCGCAGTGCGGCAAGGCGTTCGGCGCGCGCGGCCGCCTGCAGGCGCACAGCCGCACGCACTCCGAGCTGCGCCGCCACGCCTGCCACTACTGCGGCAAGGCGTTCATCAAGGCGCACCAGCTGCAGCAGCACCTCAACGTGCACACGGGCCGCAAGCCCTACAAGTGCACCACCTGTCCCAAAACCTTCGCCAACTACCCCAACTGGGCAAAACATCTGCAACGCATGCACAACATCGACCCCAAACTGGTCAAGAAACAGTTGGCCGACGCCGAAACGAACATGAATGTGGAACTGCAACGACAGGAGCCGGCGAACGAGACGCGCCCGGAATTGCGGGAGATGAAAATGGAGCAGCTGGCGATAGAAGGGGCGGAGGCGGAATGGACGCCGCCGGTGGCGCCGCCGCCCGCGTTGCCCTCGGGCgccggggcggcgggggcggcgcccgGGGACTCGGGCGACGGCGCGGTGGACGGCATCGACCCGCTGCTCATCGAGCGGGAGCTGCAGATGTTCTGCGACAACAACAACGCACAGACCTGCATCGACGACTTCGAGTTCGTCGACATGCTGCCCACCGACACCATCAACGCCTTCATTACTGAGCCGGCGGCGTCGTGCGAGGCGGCGGTGGTGCCGCtgtgcgcggggggcgcggggggcgcgggcgccgCCGTGCCTCCCGAGTACGGGCCCGAGTTCGTGAACCAGGGCTACGCGACGGCGGCGGGCGCCGTCATCGACCTGGACGACCACATCATGCCGCACATCGACCCGCTGCTCACCATCAAGCAGGACACGTGGGCGCCCTGCCCGCCGCCCTACCCGGCGCTGTGCCCGGCCGGCTACTCGCCCGGCTACTGGCCCGGCTACTCGGCCGCGGGCCCCGGCGCGTGCCAGCCGCTGGCCTGCGCCGCGCTGGAGGAGCTGGCCGACGCGCGGCCGCTGCTCACAGACCTGTTCTAA
- Protein Sequence
- MASTFQMASNEVIDLNQLCSLPKPTTIDLIGGIYCHICQITFDSKKQYDSHYAQHITGEQEIVYTCVVCRKQITGYPSFRGHCYLQHVTKDKFKCEHCSKVFSKLSSLKQHVATMHVFTCASCNQQFPTKNELRLHQIVHKIKKSKPFHQCNKCGQNIDTVDMCELHIEEHSTTEYPCSICEEISPNKPEAIQHLSKHFGEVLIKNEIQEETNPLNEDSSIDIIGGILCCFCNELFKNRIDFDLHFVTEHGDKTLVYTCIICKKQYEKYGQFGNHCHFHISKDSFECDECGKTFPRLSLLVVHTEAFHGGAGGAGGAGAAGQRARHGVGEVGEKPFSCTMCGHRFGSGPRLHEHWRVAHGRQRAPCPERGCSRSFPSVHALLLHARTHRPAARACRHCGLALAAREAAERHLPVHRIKHYACPVCARAYREKYLLLKHIPRHFEVVLHVCPQCGKAFGARGRLQAHSRTHSELRRHACHYCGKAFIKAHQLQQHLNVHTGRKPYKCTTCPKTFANYPNWAKHLQRMHNIDPKLVKKQLADAETNMNVELQRQEPANETRPELREMKMEQLAIEGAEAEWTPPVAPPPALPSGAGAAGAAPGDSGDGAVDGIDPLLIERELQMFCDNNNAQTCIDDFEFVDMLPTDTINAFITEPAASCEAAVVPLCAGGAGGAGAAVPPEYGPEFVNQGYATAAGAVIDLDDHIMPHIDPLLTIKQDTWAPCPPPYPALCPAGYSPGYWPGYSAAGPGACQPLACAALEELADARPLLTDLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00787926;
- 90% Identity
- -
- 80% Identity
- -