Chyl021485.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cephonodes hylas
Gene Symbol
-
Assembly
GCA_030295005.1
Location
AP025388.1:360432-375069[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00037 0.027 15.4 2.1 1 23 345 368 345 368 0.95
2 16 0.0015 0.11 13.4 1.5 3 23 377 397 376 397 0.98
3 16 0.057 4.1 8.5 2.4 1 23 401 423 401 423 0.98
4 16 9.5e-05 0.0068 17.2 3.7 1 23 428 450 428 451 0.95
5 16 0.06 4.3 8.4 0.1 3 23 458 479 458 479 0.97
6 16 0.06 4.3 8.4 0.1 3 23 502 523 502 523 0.97
7 16 0.06 4.3 8.4 0.1 3 23 546 567 546 567 0.97
8 16 0.06 4.3 8.4 0.1 3 23 590 611 590 611 0.97
9 16 0.06 4.3 8.4 0.1 3 23 634 655 634 655 0.97
10 16 0.06 4.3 8.4 0.1 3 23 678 699 678 699 0.97
11 16 0.2 14 6.8 3.4 3 20 708 726 707 728 0.92
12 16 0.00056 0.04 14.8 0.4 3 23 736 757 735 757 0.92
13 16 0.00011 0.008 17.0 0.7 1 23 765 788 765 788 0.97
14 16 0.00011 0.0078 17.0 0.2 2 23 800 821 799 821 0.97
15 16 3.9e-05 0.0028 18.4 1.5 1 23 827 849 827 849 0.98
16 16 5.1e-05 0.0037 18.1 0.2 1 23 855 877 855 877 0.95

Sequence Information

Coding Sequence
atggAAAATAGAGTGTTTTGTGAATTAATGTGCCGCGCTTGTCTCGGCACCGGCCGACTTTACAGTATTTATGATCACAAATTATCGGAAATATACAACGAGCTTACAGGAACAAAGGTACATCCCTACGATGGCCTGCCCCAGCACCTGTGCGTGGTCTGCAGTacgctgatgatgaagaacGCAGAGCTGAAGGATAGGTGCTACACCTCGCTCGTGATCCTTGATAACATCAAGAAGAGACAGAATATGATAACATGTGACCTCGTCTCCGAGGAGCTGAAATTCGCTCCGAAAAGGTACAGCATTTCAACTACGACCACAACCCAGTACCCACCTACAGGTTTCTCCGACATTATATTAGACCAAAGAGACCCTCCCTTCGACTACAACTACGGGAAACCGATAAAATCCGAACCAGAAATGTTCATAGACAATTTCTCTATGAAAGTCGACGAGAATTCCACAGATAGTTACAGCAGCCAACTCTACATAGACGAAGTCCAAATAAATGAAGAAGTTAATCAATTAGAAGATATAGACTCGCCTAAAGTGcaagaaaacaatgaaattgaagataaaaatcacgatgatgataaattagCTAAGAATATCCAAGCAGTTGATTCAGGCAATGATGAAGATGACAAACCAAAGAGTAAAAACTTCTACAATGAGCTCGATCAGCCAGTGGACTACGAACAGGTCATAGATGAGAAAACACtaaaaaacaataagttttaCAAAGAGTTGGCTATGCAAACAGATGAAGCTCCGgcaaaagttaaaaaaacaagAGGCAGAAAGCCTAAAACAGTCAAAGATAAAGAGAGTAAAGAAACTGTTGAGAAACCGACTAAAGTTAAGAGGACTCCTAAGATAAACAAATATAAGGGAAAGTTCTTTGAGACTAAAGAAAATATGAGTGGTTTTGAGTCTATGTATGAAGTGGAAGTTATTATATTGACAAAGGAACAACAACTAAGTGATGTATTGGAGAGAAAGACtagtcataattatttaaacagccCCTTTAGATGCCAGTACTGTTTCCGAGGGTTCATTGATGAAGACAATCTAGTGAAGCATCATAAGGCCCAACATGACCCCAGCCGTGGCACTGTCGCGTGTGAGTTCTGCCAGTTCCGCTACAGAGACAAGCGCGGTCTCAACCAACATCTCAAGACGCATCGCCTCAAGTTCGTCTGTCGGCAGTGCAAATACGTTTCTAGGACCACGTACAACGCGAAAGAGCACTACAAGATGCATCGTGGGATGATGCACGAGTGCAAAGAATGTGGGAAAGCATACGAGAAGCTGTCGACGTTCCTGACGCACATGCGGCTGCACCACGCGGCCGCGCTGGCGTGGTGCGAGCTGTGCGGCGAACCCTTCGTCGGACAGTTCGGCCTCAACGGACACAAGAACAAGGCGCACAGAGACtaCATACTGTCGACGTTCCTGACGCACATGCGGCTGCACCACGCGGCCGCGCTGGCGTGGTGCGAGCTGTGCGGCGAACCCTTCGTCGGACAGTTCGGCCTCAACGGACACAAGAACAAGGCGCACAGAGACtaCATACTGTCGACGTTCCTGACGCACATGCGGCTGCACCACGCGGCCGCGCTGGCGTGGTGCGAGCTGTGCGGCGAACCCTTCGTCGGACAGTTCGGCCTCAACGGACACAAGAACAAGGCGCACAGAGACtaCATACTGTCGACGTTCCTGACGCACATGCGGCTGCACCACGCGGCCGCGCTGGCGTGGTGCGAGCTGTGCGGCGAACCCTTCGTCGGACAGTTCGGCCTCAACGGACACAAGAACAAGGCGCACAGAGACtaCATACTGTCGACGTTCCTGACGCACATGCGGCTGCACCACGCGGCCGCGCTGGCGTGGTGCGAGCTGTGCGGCGAACCCTTCGTCGGACAGTTCGGCCTCAACGGACACAAGAACAAGGCGCACAGAGACtaCATACTGTCGACGTTCCTGACGCACATGCGGCTGCACCACGCGGCCGCGCTGGCGTGGTGCGAGCTGTGCGGCGAACCCTTCGTCGGACAGTTCGGCCTCAACGGACACAAGAACAAGGCGCACAGAGACCTAAAATTCCCCCCGGACTGCAAATGCGAGTGCGGAGCTCACTTCACGAACCTGGATGCTCTCCATCATCACACCGAGAGTGGCTGTTGCGGCGAGAACCCTTGCCTCCACTGCGGAGCCACCTTCTCATCCAGGGTCGAGCTGAAGGACCACCTTCTGGACACACACAGGCAGGTCAAGAAGAAATACTACAATTGTCCTAAGTGCAGCAAGATTTTCAGAAGCGAAAGTCTGTATGGGGCTCACTACCGGCGGGTGCACGTGGCGGTGAGGCGGGCTGACTCGTCGCCCTGGGTGTGTGAGATGTGCGGCAAGACACTACCGAACAAGTCTCGGCTGGTGTACCATCAACGAGTCCACACTGGGGAAAGGCCATATCAGTGTCTCCAATGTCCAAAGACTTTCACAATGTCCAAATTATTGcggTCCCATTCTCGAGTCCACACCAACGAGAGACCATTTGCCTGCAAGCTCTGCCCCAAGTCTTTCAAGGGACCTTCGGCGTTAAGGTCCCATGAGTACGTCCACTCGGGCGGCCGGAAGAAAATAAGAACACGAAGCATTATGGTCAGAAACGTAGACGGAGAAGATGTATAA
Protein Sequence
MENRVFCELMCRACLGTGRLYSIYDHKLSEIYNELTGTKVHPYDGLPQHLCVVCSTLMMKNAELKDRCYTSLVILDNIKKRQNMITCDLVSEELKFAPKRYSISTTTTTQYPPTGFSDIILDQRDPPFDYNYGKPIKSEPEMFIDNFSMKVDENSTDSYSSQLYIDEVQINEEVNQLEDIDSPKVQENNEIEDKNHDDDKLAKNIQAVDSGNDEDDKPKSKNFYNELDQPVDYEQVIDEKTLKNNKFYKELAMQTDEAPAKVKKTRGRKPKTVKDKESKETVEKPTKVKRTPKINKYKGKFFETKENMSGFESMYEVEVIILTKEQQLSDVLERKTSHNYLNSPFRCQYCFRGFIDEDNLVKHHKAQHDPSRGTVACEFCQFRYRDKRGLNQHLKTHRLKFVCRQCKYVSRTTYNAKEHYKMHRGMMHECKECGKAYEKLSTFLTHMRLHHAAALAWCELCGEPFVGQFGLNGHKNKAHRDYILSTFLTHMRLHHAAALAWCELCGEPFVGQFGLNGHKNKAHRDYILSTFLTHMRLHHAAALAWCELCGEPFVGQFGLNGHKNKAHRDYILSTFLTHMRLHHAAALAWCELCGEPFVGQFGLNGHKNKAHRDYILSTFLTHMRLHHAAALAWCELCGEPFVGQFGLNGHKNKAHRDYILSTFLTHMRLHHAAALAWCELCGEPFVGQFGLNGHKNKAHRDLKFPPDCKCECGAHFTNLDALHHHTESGCCGENPCLHCGATFSSRVELKDHLLDTHRQVKKKYYNCPKCSKIFRSESLYGAHYRRVHVAVRRADSSPWVCEMCGKTLPNKSRLVYHQRVHTGERPYQCLQCPKTFTMSKLLRSHSRVHTNERPFACKLCPKSFKGPSALRSHEYVHSGGRKKIRTRSIMVRNVDGEDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-