Chyl001478.1
Basic Information
- Insect
- Cephonodes hylas
- Gene Symbol
- -
- Assembly
- GCA_030295005.1
- Location
- AP025361.1:2481758-2484909[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.009 0.65 11.0 0.6 1 21 38 58 38 61 0.90 2 17 0.00037 0.027 15.4 0.3 1 23 68 91 68 91 0.92 3 17 0.035 2.5 9.1 0.3 1 23 152 174 152 174 0.95 4 17 0.072 5.1 8.2 0.2 2 23 200 222 199 222 0.92 5 17 0.00072 0.051 14.5 2.1 1 23 244 266 244 266 0.98 6 17 0.00022 0.016 16.1 4.7 1 23 270 292 270 292 0.98 7 17 0.0038 0.27 12.2 0.1 1 23 297 320 297 320 0.90 8 17 0.017 1.2 10.2 2.3 1 23 326 349 326 349 0.96 9 17 0.43 31 5.7 1.3 1 19 397 415 397 416 0.92 10 17 6.1e-05 0.0044 17.8 0.1 1 23 487 509 487 509 0.99 11 17 2.9e-05 0.0021 18.8 1.0 2 23 514 535 513 535 0.95 12 17 0.005 0.36 11.8 2.4 2 23 542 563 541 563 0.97 13 17 0.00052 0.038 14.9 4.6 1 23 569 592 569 592 0.97 14 17 0.00013 0.0097 16.7 0.1 1 23 598 621 598 621 0.96 15 17 8.8e-05 0.0063 17.3 0.7 1 23 627 649 627 649 0.95 16 17 0.0004 0.029 15.2 7.6 1 23 655 677 655 677 0.98 17 17 0.0036 0.26 12.3 0.7 1 23 681 704 681 704 0.97
Sequence Information
- Coding Sequence
- atgttgactagactaaaaGGGAACTTTCCCTGCGGCGCGTGTGATGAGGTACTCGAAACGCGAGCGGCGAGAATGTTTCACAGAATGCGAGTGCATCGCAAGGGAGTTAGGTACACGTGTCCTCGTTGCTCTGAAGTGTTCACTTCGTACCACGCGAGAGTGCGCCATCTTGTAGATGTACACGGACAACAGAAGATTGAATACGTGTGTGATGTTTGTGGGAAAACGTTCGAAACCAGCTCGAAACGAGCAGGACATTTCCGTCTCGCTCACACCACAGAGAAAACACACGAATGCCCACACTgcTTGAATGAAGACTCGAAGAAAGCAGAGGATAGCGCGATTAGGGTCGTGTGGAAGCGTAAGAGAGGCGTTCTCATCGAGGACAAGGCGAACGCCGCCATGATTCTAAAATACTCAAACGCTGTGGTGTTTAGGTGGCAGAGAGGGAAGTTCATGTGCGCGTATTGCCCACAAATATGCACCGATGTAGCCGCATTGCGCTCTCATTCCActattcattataataaacttGATATTTTTGAGAAACCTGAAGTGCGCAACTCATTTCCTCTGCGAGTAGACATCACAGACTTGTCGTGCGATATATGTAAACAGAGGGTACAAAGCATGGACAATTTCAAGGCGCATTTAGCTGAAATGCATTCGCATAACGTGAATCCAAAATACACGGATGGGGTGATACCCTTTGTTCTGACTGAGAAGGAATTTAAATGTGTTCACTGTGGTAAACAATACGAGGGATTCATGAACCTTTTTATTCATATGAATAACCACTACCAGAGTTTTATATGCCACATATGTGGAAAAGGATATTCAGCGAAGCATAAGTTGAGGTCTCATAGGAAGAGTCATGAGTTAGGCGAGTTTCAATGTTCCAAATGCGACATGGTGTTTCCCAGTCGACCTGCAAAGAATCGGCACGTGGCGGCTGCGCATGCGCGGAAGGAAAAGTATAGGTGCCCCTTATGCGATACGTATTTTGATTCGTACCACTCGAGGCTGCGACATTTGGACAAGATTCATGGACAGAGAGCGGAGTACAGATgCTCCGCACGTCCCTCGCAATTATGGCGTTCGAAGACCAAATACAAGGACCACCGGCATAACGCAGCGATTATCGTACAGAACTCAAACGCTTGCCCATTTAGGTGGACCCCCGGGAAGTACAAATGCGCTTATTGCGAGCTCACGTTCGGTGACTGCCACGGGGTTAGGCTGCACTGGCCAGATCACACGAATAGAaccgattttttaaaatacgcCCGATCTTATACTAAAACGAAAATAGAAGTTACCGATTTGAAATGTGAACTTTGTATGGAAAGCATGAGCAATCTAGAAATGTTGGCGGAACATTTAGTCTCTCGTCATGATAAGCCCATTAAAAAAGAATGCAGTTTAGGTGTCACACCGTATTTGATAAAAGGAGGTTCTTATACATGTGCGTTTTGCGGCGCTAGTTTCGTTGTATTCAGTGGTCTGAATGCCCATATAAATACTCATGACCCGAGCTGTATTTGTTCGACCTGCGGCAAAGCGTTTGCGACATTGCAAAATCTCAAATCACACCTCGTCATGCATGACGATAACTCAGACCTAAAATGTAGGAAATGCGACGAAGTGTTTGCGACTAAAGAATTGAAACACATTCATATGACGAAGCATGCTGTGGCTCGTCCCTACAAATGTCCGTATTGTAACGAAACGTTCAAGAATTACAACCATCGGAGGATGCATTTAGAGAAGAATCATGACAAGAAGGTGGAATACCCTTGTTCGCTATGCCCGGCTGTGTTTTCCATGAGCGATAGACTGACGAAGCACATACGAGGTGTTCATGTGAAGCACAAGACGTTTCTGTGCACTGATTGTCCGCAGAGATACGCTACAGCGTCCCGGTTGAAGAAACATTTGCAATCACACAGCGCAGAGAGAAACTATCATTGCGAAGTTTGCAGTAAAAGCTACAAGAAACATGAGAATCTTAAACATCACATGACAGTGCACAGTGATAGATTTGTGTGCGAAATTTGTAATGAAGATTTTTCTCAGAGAATTGCCCTTGCATGCCACTTGAAGACTCAGCACTCAGATaagaaaaaatga
- Protein Sequence
- MLTRLKGNFPCGACDEVLETRAARMFHRMRVHRKGVRYTCPRCSEVFTSYHARVRHLVDVHGQQKIEYVCDVCGKTFETSSKRAGHFRLAHTTEKTHECPHCLNEDSKKAEDSAIRVVWKRKRGVLIEDKANAAMILKYSNAVVFRWQRGKFMCAYCPQICTDVAALRSHSTIHYNKLDIFEKPEVRNSFPLRVDITDLSCDICKQRVQSMDNFKAHLAEMHSHNVNPKYTDGVIPFVLTEKEFKCVHCGKQYEGFMNLFIHMNNHYQSFICHICGKGYSAKHKLRSHRKSHELGEFQCSKCDMVFPSRPAKNRHVAAAHARKEKYRCPLCDTYFDSYHSRLRHLDKIHGQRAEYRCSARPSQLWRSKTKYKDHRHNAAIIVQNSNACPFRWTPGKYKCAYCELTFGDCHGVRLHWPDHTNRTDFLKYARSYTKTKIEVTDLKCELCMESMSNLEMLAEHLVSRHDKPIKKECSLGVTPYLIKGGSYTCAFCGASFVVFSGLNAHINTHDPSCICSTCGKAFATLQNLKSHLVMHDDNSDLKCRKCDEVFATKELKHIHMTKHAVARPYKCPYCNETFKNYNHRRMHLEKNHDKKVEYPCSLCPAVFSMSDRLTKHIRGVHVKHKTFLCTDCPQRYATASRLKKHLQSHSAERNYHCEVCSKSYKKHENLKHHMTVHSDRFVCEICNEDFSQRIALACHLKTQHSDKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -