Basic Information

Gene Symbol
ZFX
Assembly
GCA_030295005.1
Location
AP025379.1:436185-440307[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.44 31 5.7 1.5 1 23 182 205 182 206 0.95
2 22 8.5 6.1e+02 1.6 2.2 1 23 252 274 252 274 0.93
3 22 1.2 87 4.3 0.1 6 23 286 304 286 304 0.97
4 22 0.002 0.14 13.1 0.3 2 23 313 335 313 335 0.94
5 22 1.3e-06 9e-05 23.1 1.0 2 23 358 379 358 379 0.97
6 22 6.2e-07 4.5e-05 24.1 0.6 1 23 386 409 386 409 0.97
7 22 0.00058 0.042 14.7 0.0 1 23 415 437 415 437 0.98
8 22 7.7e-05 0.0055 17.5 0.6 1 23 443 465 443 465 0.98
9 22 6.6e-05 0.0048 17.7 7.6 1 23 471 493 471 493 0.99
10 22 0.67 48 5.1 5.1 1 23 607 629 607 629 0.95
11 22 0.00046 0.033 15.1 2.0 2 23 636 658 635 658 0.92
12 22 2.8e-06 0.0002 22.1 2.5 1 23 664 686 664 686 0.98
13 22 2.2e-06 0.00015 22.4 3.5 1 23 692 714 692 714 0.99
14 22 0.0036 0.26 12.2 2.7 1 23 720 742 720 742 0.96
15 22 1.8e-05 0.0013 19.5 3.1 1 23 748 770 748 770 0.96
16 22 0.09 6.5 7.9 0.1 1 17 776 792 776 792 0.91
17 22 0.5 36 5.5 0.4 3 23 837 856 836 856 0.95
18 22 4.4e-05 0.0032 18.3 0.1 1 23 862 885 862 885 0.95
19 22 5.5e-06 0.0004 21.1 4.0 1 23 891 913 891 913 0.97
20 22 1.9e-05 0.0014 19.4 0.5 1 23 919 941 919 941 0.98
21 22 0.002 0.14 13.1 0.1 3 23 948 968 948 968 0.97
22 22 0.024 1.7 9.6 3.4 5 23 977 995 974 995 0.96

Sequence Information

Coding Sequence
ATGAATACAAAAACAGAACAGCGATTCGTTATGAATACAAATGATAATAAACCTTCATCAACAACCCCGAGACTAGTGGAAACAACTGAGCCGGCTCAAGTTAATCTGGAAAATGTGCAAGACTTTTCCAATGTGTGTCGGACATGTGCCACGGTCACCGAGTTTGTCATACCAATATTTGAAGGCGAAGGTTTGCAGAATAACCTTGCAGAAAAGATTAAGAAGCATTTACCTATAACGGTAACAGAGCAAGATGTACTGCCCAAAGTGGTGTGCTACCAATGCGCTAGTACATTATTTGCATGGCATGAACTGGTCAAGTGCTGTGTACAGGCAGATGAAGCACTTAGATCCCGCTTGCCAAACCTGACAACTTCTGCTCCAAAGgaTGTAAAACCATCAATATCAGGAAGCAGCCAGCCTGTCAACACAAACCAAAAAAACAAGTGTGACACTCctatagaattttataataaagttagAATTGTTCTAACTGATTACTATTACACATTGAATATTGATGAAAATGATTCAGATATGAAATATGTATGCGAGAAATGTTCTGCAAAGTCATTGACTACTACAGCCATGTTGGCTGATCACCTACATATGCATCACTATGATGAAGTCTGCCTAAATCTTGAAATGTTCATCAAAGAGTTTATAACATTTGAAGAAACTTTAATGTCTGAAGCATCAGATCGTGATGAACAatctgatgaagaagaaatgcCAGACAAAGACATACCGAATTATTTCTGTCCATTCTGTGAGAATATTTACTCTTCTCCAACGAGACTGCTCTGCCATTTGAGTAAACATGTGGAACTGAGCATAGAAGATGGTGTTATGTGCTGCGATGTCATATACAAGGATAAAAAGGCATTCGTTACACATTTGCAAAAGGACCATGTGGATCGTGTTGCTACAAACAATGTTTGCAAAACCTGCGGTTACACTACAAATGATGTCAACGATTTACAAAAGCACATCAATGATCTACACGTATCTGACAATATTGTAAAAGAGAAGAAGCCGCAAAGCCTTAGGAACCAAAAGTACATCCCGGCCGTGTGTCCGGAATGCAACAAAACATTCTCGAACAAATACAATATGTTTGTGCATTTAAAAAGCCATAACAAAGAGAGTGCGGTGTATTCCTGCGATAAATGTAACAAAGTTTACACAAATGCTGGCAATCTGAAGAGCCACCAGCGTCTGGCGCATGAAGGGATCCTCAAGTATGTGTGTTCTGAGTGTGGAGAAGCTTTCCCAAGCCGGTCCAGTCGCGACATACACGCCAGGATACACTCCGGAGAGAAACCATTCCGATGCGATCAGTGCGGGAAAGCATACCGAGCCAAGAACACGCTCGACCGCCATTTAGAAACGCATTTAGACCTGAGGAAATACGAATGCCACATCTGCAATAAGAAATTTCGCAAAAGAACACACTTAAACTATCACTTGAGCACGCACGCAAAGAAAAGTAACGGAGGCTTAATCGACGACGATGACGAACCACTGTCGAGTCTAGCgaacaaaaaaacaaacgaTCTATACAACAATTTTTACAAAGCTTTAGTAAACTTCAAAAACCATTTCGCTACCAAACATAAATCTTTACAAACGTACCCCGAGCTCACTGATTCTAGTGACTCGGAGGCTTTTGATGATGTCGAAGAAAGTAACGTGAATGGAGACAGCATTGAAAACTACGATGATCTGTCACAGTGTAATATGAGAAAAGATCGCATGGACGAGGAGTCGAGGCTAGAACTCGTACAAGTACAAAGAAAAGTTAACGGAAAAGTATACTACACTTGCAAGATATGCGATAAAAACTTGAGTTCTACCCACACTTACTTCTTCCACAAGCGAATTCATACAGGAGAGCGTCCCTGCGTGTGTCACGTGTGTGGGAAACAGTTCCGAGCGCCCAACGGCTTGCAGAGACATCTGACGGAAACGCACGAGCGCCTCCGAAGACATACGTGTATGCTGTGCCCTAAGAAATTCGCCAACTCTCAGAATCTCAAACAGCACATGAGAATCCACACTGGAGAGAGGCCTTACGTTTGCGTTCATTGCGGGAAGCGGTTCACCCAGAGCGGCTCTTTGCACGTCCACTTGAAGACCCACAGCGAACAGTATCCTCATCATTGTGCTGAGTGTGGAGCCAAATTCCGACTTCGAGCTGGACTCACTCGGCATCGGTTAAAGCACACCGGTGAGAGACCGCACGCGTGCGCACACTGCGGGAAAGGGTTCAGACAGAGGCACGAGCTGAACAACCACATCATAATCCACACGGACGCGAAGCCCCACAGCTGCGTGGTGTGCGGGACCGCCTTCAAGCAGCGCCGGGCGCTCCGACCGAATAAAATAACGTCAGCAAATCAGTTAGACGAAGACGAAGCACGCGAAGTGACGAAAGCTGAACCAAAAGTATCGGTAGACAAACATCCCGTAGTGAGTGTCGGCGAGGACGGCAAGAAGTACGCCGCGTGCCAGTACTGCGACAAGAACATCGCGCTGAGTTCTTGGAAGCGGCACGTGAGGCGGCACGAGGGCGAGAGGCGGTACAGCTGCGCCACGTGCGGGCTCGCGTTCAACGACAGCGGCAACCTGGCGAGACACACGAAGGCGTTGCACGGCAAGCTGCGGCCCCACGTGTGCCAGCTGTGCAACAAGGCGTTCTCGCGGAGCAGCCACTTGCAGGACCACGTCAAGTCACATTCGGACAGCAGGGAGTTCGTGTGCCACGTGTGTGGGAAGGCGTCGAAGTCGAGTGCGGCGCTGCGCATGCACGGGCGCACGCACGGCGCGCGGCGGCTCGGCTGCGTGCAGTGCGGCGCGCGGTTCAAGCGGCGCGCCGAGCTGGCGGCGCACGTCACTGTGCACACCGGGGAGAGGGCGCACCGGTGCGGCTGCGGCCGGGCCTTCCGCCTACACACACAACTCACCGCGCATGCCAGGACGCATCGGAAACagcaataa
Protein Sequence
MNTKTEQRFVMNTNDNKPSSTTPRLVETTEPAQVNLENVQDFSNVCRTCATVTEFVIPIFEGEGLQNNLAEKIKKHLPITVTEQDVLPKVVCYQCASTLFAWHELVKCCVQADEALRSRLPNLTTSAPKDVKPSISGSSQPVNTNQKNKCDTPIEFYNKVRIVLTDYYYTLNIDENDSDMKYVCEKCSAKSLTTTAMLADHLHMHHYDEVCLNLEMFIKEFITFEETLMSEASDRDEQSDEEEMPDKDIPNYFCPFCENIYSSPTRLLCHLSKHVELSIEDGVMCCDVIYKDKKAFVTHLQKDHVDRVATNNVCKTCGYTTNDVNDLQKHINDLHVSDNIVKEKKPQSLRNQKYIPAVCPECNKTFSNKYNMFVHLKSHNKESAVYSCDKCNKVYTNAGNLKSHQRLAHEGILKYVCSECGEAFPSRSSRDIHARIHSGEKPFRCDQCGKAYRAKNTLDRHLETHLDLRKYECHICNKKFRKRTHLNYHLSTHAKKSNGGLIDDDDEPLSSLANKKTNDLYNNFYKALVNFKNHFATKHKSLQTYPELTDSSDSEAFDDVEESNVNGDSIENYDDLSQCNMRKDRMDEESRLELVQVQRKVNGKVYYTCKICDKNLSSTHTYFFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERLRRHTCMLCPKKFANSQNLKQHMRIHTGERPYVCVHCGKRFTQSGSLHVHLKTHSEQYPHHCAECGAKFRLRAGLTRHRLKHTGERPHACAHCGKGFRQRHELNNHIIIHTDAKPHSCVVCGTAFKQRRALRPNKITSANQLDEDEAREVTKAEPKVSVDKHPVVSVGEDGKKYAACQYCDKNIALSSWKRHVRRHEGERRYSCATCGLAFNDSGNLARHTKALHGKLRPHVCQLCNKAFSRSSHLQDHVKSHSDSREFVCHVCGKASKSSAALRMHGRTHGARRLGCVQCGARFKRRAELAAHVTVHTGERAHRCGCGRAFRLHTQLTAHARTHRKQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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