Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.9 1e+03 0.2 0.1 16 27 54 65 49 73 0.81

2 9 0.00026 0.3 11.6 0.0 2 44 89 126 88 126 0.92

3 9 0.067 77 3.8 0.2 14 28 144 158 137 170 0.83

4 9 0.86 9.9e+02 0.3 0.4 17 28 176 187 168 200 0.74

5 9 7.5e-07 0.00087 19.7 2.0 11 44 200 228 193 228 0.87

6 9 0.82 9.5e+02 0.4 1.1 16 31 230 246 228 255 0.73

7 9 0.38 4.4e+02 1.4 6.0 11 43 254 283 242 284 0.85

8 9 0.0069 8 7.0 1.5 4 23 276 295 273 298 0.89

9 9 0.82 9.5e+02 0.4 3.2 6 38 307 335 306 341 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.9	1e+03	0.2	0.1	16	27	54	65	49	73	0.81
2	9	0.00026	0.3	11.6	0.0	2	44	89	126	88	126	0.92
3	9	0.067	77	3.8	0.2	14	28	144	158	137	170	0.83
4	9	0.86	9.9e+02	0.3	0.4	17	28	176	187	168	200	0.74
5	9	7.5e-07	0.00087	19.7	2.0	11	44	200	228	193	228	0.87
6	9	0.82	9.5e+02	0.4	1.1	16	31	230	246	228	255	0.73
7	9	0.38	4.4e+02	1.4	6.0	11	43	254	283	242	284	0.85
8	9	0.0069	8	7.0	1.5	4	23	276	295	273	298	0.89
9	9	0.82	9.5e+02	0.4	3.2	6	38	307	335	306	341	0.83

Coding Sequence: ATGGAAAACAACGAATCCTCTATCGCAGGATTACAAAGTAGAACTGTTAAGAATGAAAAACAGTCTGTTTCATCCAAAGACAAGCTGCAAATATTAAGAGAAAGTGGTGCGCAGCTATTGATGAGTTCAACACTGATGCCCTTTCGATGGTTGAAAAGTTCTTACAGATGCTTTTACTGTTACGAAGTCTTCAAAGAACCTAAAGACCTAAAATCACATCAGATCGAACATCAAGATTCACAAGAAATTACGACGacgatgaaaaaatattggGATCTCTTTATCTACGTTGACATTTCGAACATCTCGTGCCGACTTTGTCCCGAAATTATTAAAGACTTGGACACTTTAACCGAACATCTAACTGTACAACATCGAATTCCATACAACAAAGAAATAGTAACCTGCATAAAGCCTTTCAAACTTCAAGATATTACAGTGCACTGCGTGCTGTGTGATAAGCAGTACACAAACTTCGCATTCCTTTTGATACATACAAATAAAGAGCACGCTGGTTTGTCGCCGATACTATGTGAAATCTGCGGGCAACATTTCAAAACAGAAAGATTGTTACGCGACCATGTGAACCAAGACCACGAAAAAAAGCCAGTTGAATGCAACATTTGCGGCGAAACTATTATAAGTATGAGCAGAATGCGAACTCACTTGCAACGAGCACACAACAAAAGATACAAGTGTTTCTTCTGTACGGAGACTTTTGAAAACCACTACAAAAGAACCAGGCATATGATAGTAGTGCATAAAAAGAAGGAAGAACATCGTTGCTCTCACTGTCCTCTAACATTCGTTTACAGGAATCGACTGCTGACGCATGTCCGGGAGAAACATTTACGCGAGAAGAACGTAGTTTGTAGTATTTGCGGATGGGAGGGTTTTGGAAAGACCAGCTTAGATTTACATATGAGAAAGCACAGTGATGAGAGGAACTATCCATGTCCTTCATGTGATAAGGCctttaaaacaagaaaaaatatgagGCAGCATCATGTCAATATTCACCAGAAAGGCGTAAAAGGTCGCGCGGTATTGCCAAGTGGTCCGTTTGTTGTATag
Protein Sequence: MENNESSIAGLQSRTVKNEKQSVSSKDKLQILRESGAQLLMSSTLMPFRWLKSSYRCFYCYEVFKEPKDLKSHQIEHQDSQEITTTMKKYWDLFIYVDISNISCRLCPEIIKDLDTLTEHLTVQHRIPYNKEIVTCIKPFKLQDITVHCVLCDKQYTNFAFLLIHTNKEHAGLSPILCEICGQHFKTERLLRDHVNQDHEKKPVECNICGETIISMSRMRTHLQRAHNKRYKCFFCTETFENHYKRTRHMIVVHKKKEEHRCSHCPLTFVYRNRLLTHVREKHLREKNVVCSICGWEGFGKTSLDLHMRKHSDERNYPCPSCDKAFKTRKNMRQHHVNIHQKGVKGRAVLPSGPFVV

Sequence clustering based on sequence similarity using MMseqs2