Basic Information

Insect: Cenopis cana
Gene Symbol: ush
Assembly: GCA_951800055.1
Location: OX637477.1:2984575-2989600[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.012 0.91 11.2 0.2 1 20 130 149 130 151 0.94

2 9 0.00014 0.011 17.3 0.9 1 23 189 211 189 211 0.98

3 9 0.19 15 7.4 0.4 3 20 242 259 241 261 0.92

4 9 0.047 3.6 9.3 3.6 2 21 501 520 500 521 0.93

5 9 0.0094 0.72 11.5 0.4 2 20 548 566 547 568 0.91

6 9 1.9 1.5e+02 4.3 0.0 2 23 596 617 595 617 0.94

7 9 0.014 1.1 11.0 1.3 1 23 623 645 623 645 0.99

8 9 0.32 24 6.7 1.1 1 23 682 705 682 705 0.96

9 9 0.29 23 6.8 0.7 2 20 737 755 737 757 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.012	0.91	11.2	0.2	1	20	130	149	130	151	0.94
2	9	0.00014	0.011	17.3	0.9	1	23	189	211	189	211	0.98
3	9	0.19	15	7.4	0.4	3	20	242	259	241	261	0.92
4	9	0.047	3.6	9.3	3.6	2	21	501	520	500	521	0.93
5	9	0.0094	0.72	11.5	0.4	2	20	548	566	547	568	0.91
6	9	1.9	1.5e+02	4.3	0.0	2	23	596	617	595	617	0.94
7	9	0.014	1.1	11.0	1.3	1	23	623	645	623	645	0.99
8	9	0.32	24	6.7	1.1	1	23	682	705	682	705	0.96
9	9	0.29	23	6.8	0.7	2	20	737	755	737	757	0.92

Sequence Information

Coding Sequence: ATGAGTGAATTTGAGATCTGTATCACGACGTGGCTGCCATATCTATTGGACACACCAGGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCAGGAGAACCTCGCACGCCAAGCTCAGGGGGAGAGCGGGCCGCATCGAGCGGCGGCGCGTCGCCGGCGTCGGCGTCCGCCGGCTCCCCGGCCGCCTCCCCGCCGCGTCTGCGCCTCAACACAAGCCTTGCCACTGACCCCGCGTTAGCACCTTCCGCAACGCCCGTGAAGCGCGAACTCCCATCGCCGTCTCCCCCGGCGCTGCCAGCCACAACGCAAGCGCAAGCCAGAGACTATCTCGCCCTTACAGCGGCGGCGTTCCCTGCGCTCTTCCCTGTCGCACCAACGGGCTACATGTGCACGCCATGCGGCATCCGTTACTCTTCACTAAGCACGCTGCAAGCGCATCAGGAGCACTATTGCTCGAACAGACGGCCGAAGCCGTCCGAATCAGCGGAACCGGGCGCTGATGCCGCCGGCGATGAATCGAGCAGCGACGCAAAGACTCCGCGACGTACAGGAAAGCAATACGCTTGCACCTACTGCTCTTACAGTGCTGATAAGAAAGTCAGTCTCAACAGACATATGCGCATGCATTCCTCATCTCCAGTCAGTAGCGGGACGCCTGCGCCAACACCTACTTCTAACGGAGAAGCAACCGAAGGCCAACCGTCGCCTGACCGGTACTGCGCTGACTGCGATATCAGGTTCAGCTCGATACAGACTTATCGGGCTCATAAGACACATTACTGCAGCACGAGGCAGGTGGTGAAGCCTGCCTTAGCTTCAGCAAGAGGGAGCTCGGTGACATCGGGGTCTGCACCTCCTTCACCTGGCGCCACCCCGCCAGCTCAGAACCAATATGCGCTAGCCCTGCCTACGAATCCCATACTCATCGTCCCGTATTCACTGCTTCGGGGCGCAAGCACGCTCCCAGGCACAACTCTGCCTGATCCCGACACGCCATGCTTTTTACTACCAAACGGCACATTCCAGCCGCTAAGCCGAGCCATACCAAATATGAATTCCGATGGAAAAGAAGCTGAAGTCTTAAAGTCAGCAAATCGGCCTCGCGAGCCTTTGAAAGATGGAGGCACGCCTTTGGATTTAAGCGTACGACGGACGCCCGAGTCAGTTGGGACTGATGAGCATGAAAAGGAAAATAGACTGAGATCTGCGACCCCAGAACAGATTGTCTGCGCGCCTTCACTGCCAGGGTCTCCAGGCACACCGTCGCCACAACGTCGATCCTCGTCTCCCAGCGGAGAGAGTTCACCAAAGCGCCGAAGACGGGACTCTAGAGGGCCAACGCCGAAACCCCCAAGCGTCCCTTCTCCCCCCGAAGGCAAGTTCACCCCGGTTGTGCCGCCCGCAATTCTGCCCCCCGCTCTAGCCATGCGCCTCGCCTCAGAACTGCCTCTCGCAGCAGCCTCCCCACAAGTCCTAGTCAAGCAAGGCGTCTCAAAATGCAAAGAATGCAACATCGTCTTCTGCAAATACGAGAACTATCGTGTTCACAAGCAGCACTATTGTTCCGCGGGCGGGGAGGAGCGAGCTAGTCCGGCGCCGCCTGAACCGGGTCCGCCGCCACAATACCGCCAGCTTTACTGTCTCGCCTGCGGGATCCACTTCAGTTCCCTGGATAATCTCACGACGCATCAGAGTTTTTACTGCACGAAGCGGGAAACGCGTTCACCGAGGACGGTTCCTGAAGCTCCAAGGCCGTCATCTGGATCGGAAGGCGGGTGGAAGTGTCCGTGCTGTGACGTGGTGTCTCCAACGGCGGCCGCTGCGCAGCGTCATATGGAGGCCCACGCCGGCGTCAAGGCCTTCCGCTGCACCATCTGCCGCTACCGCGGGAACACGCTGCGCGGGATGCGCACGCACATACGAATGCATTTCCCGAAGAAGCCTGCTGATTTGCAGgaGGAAAGCTACATAGCCTGCGTAGTCGAGGAGGAAAGTCGCGAGACAACCTCCCCCTCCCCCGCCGTCGGCGAACGCGTGCACCGCTGCAACTCCTGCGCCTACACCTCCACCTACCGCGGCAACGTTGTCCGCCACGCCCGCCTCGTCCACGCCACCGACGACCCAGAACCAGAAGAAACTTCCCCCATCCCCGTCGCAGACATCAAAAAGGAGCCAGAGACAGAGATGGAGGAAACACCCAACTATTGCAAGTCCTGCGATATCTCTTTCAAATACGTTAACACTTATAAGGCGCATAAGCAGTTTTATTGCACGGCCAATAACCAAGATGCTGCGGCGAATAATAATGTGCCGCCGGCGCTGCCAACCGCGCGGGTCAACGAAGTGCTATGA
Protein Sequence: MSEFEICITTWLPYLLDTPGEDEEWGNESEAMPGEPRTPSSGGERAASSGGASPASASAGSPAASPPRLRLNTSLATDPALAPSATPVKRELPSPSPPALPATTQAQARDYLALTAAAFPALFPVAPTGYMCTPCGIRYSSLSTLQAHQEHYCSNRRPKPSESAEPGADAAGDESSSDAKTPRRTGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEATEGQPSPDRYCADCDIRFSSIQTYRAHKTHYCSTRQVVKPALASARGSSVTSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRGASTLPGTTLPDPDTPCFLLPNGTFQPLSRAIPNMNSDGKEAEVLKSANRPREPLKDGGTPLDLSVRRTPESVGTDEHEKENRLRSATPEQIVCAPSLPGSPGTPSPQRRSSSPSGESSPKRRRRDSRGPTPKPPSVPSPPEGKFTPVVPPAILPPALAMRLASELPLAAASPQVLVKQGVSKCKECNIVFCKYENYRVHKQHYCSAGGEERASPAPPEPGPPPQYRQLYCLACGIHFSSLDNLTTHQSFYCTKRETRSPRTVPEAPRPSSGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFPKKPADLQEESYIACVVEEESRETTSPSPAVGERVHRCNSCAYTSTYRGNVVRHARLVHATDDPEPEETSPIPVADIKKEPETEMEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDAAANNNVPPALPTARVNEVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_01073106;
80% Identity: -